The supply and demand of omega‐3 highly unsaturated fatty acids (ω‐3 HUFA) in natural ecosystems may lead to resource limitation in a diverse array of animal taxa. Here, we review why food quality in terms of ω‐3 HUFAs is important, particularly for neural tissue, across a diversity of animal taxa ranging from invertebrate zooplankton to vertebrates (including humans). Our review is focused on ω‐3 HUFAs rather than other unsaturated fatty acids because these compounds are especially important biochemically, but scarce in nature. We discuss the dichotomy between ω‐3 HUFA availability between aquatic primary producers, which are often rich in these compounds, and terrestrial primary producers, which are contain little to none of them. We describe the use of fatty acids as qualitative and quantitative tracers for reconstructing animal diets in natural ecosystems. Next, we discuss both direct and indirect ecological implications of ω‐3 HUFA limitation at the individual, population, food web, and ecosystem scales, which include: changes in behavior, species composition, secondary production rates, trophic transfer efficiency and cross‐ecosystem subsidies. We finish by highlighting future research priorities including a need for more research on ω‐3 HUFAs in terrestrial systems, more research their importance for higher order consumers, and more research on the food web and ecosystem‐scale effects of ω‐3 HUFA limitation.

Once-abundant aerial insectivores, such as the Tree Swallow (Tachycineta bicolor), have declined steadily in the past several decades, making it imperative to understand all aspects of their ecology. Aerial insectivores forage on a mixture of aquatic and terrestrial insects that differ in fatty acid composition, specifically long-chain omega-3 polyunsaturated fatty acid (LCPUFA) content. Aquatic insects contain high levels of both LCPUFA and their precursor omega-3 PUFA, alpha-linolenic acid (ALA), whereas terrestrial insects contain much lower levels of both. We manipulated both the quantity and quality of food for Tree Swallow chicks in a full factorial design. Diets were either high-LCPUFA or low in LCPUFA but high in ALA, allowing us to separate the effects of direct LCPUFA in diet from the ability of Tree Swallows to convert their precursor, ALA, into LCPUFA. We found that fatty acid composition was more important for Tree Swallow chick performance than food quantity. On high-LCPUFA diets, chicks grew faster, were in better condition, and had greater immunocompetence and lower basal metabolic rates compared with chicks on both low LCPUFA diets. Increasing the quantity of high-LCPUFA diets resulted in improvements to all metrics of performance while increasing the quantity of low-LCPUFA diets only resulted in greater immunocompetence and lower metabolic rates. Chicks preferentially retained LCPUFA in brain and muscle when both food quantity and LCPUFA were limited. Our work suggests that fatty acid composition is an important dimension of aerial insectivore nutritional ecology and reinforces the importance of high-quality aquatic habitat for these declining birds.

Aquatic and terrestrial ecosystems are connected through reciprocal fluxes of energy and nutrients that can subsidize consumers. Past research on reciprocal aquatic–terrestrial subsidies to consumers has generally focused on subsidy quantity while ignoring major differences in the nutritional composition of aquatic and terrestrial resources. Because aquatic resources contain substantially more highly unsaturated omega‐3 fatty acids (HUFAs) than terrestrial resources, aquatic subsidies may play a unique role by supplying these critical compounds to both aquatic and terrestrial consumers. Here, we first characterized nutritional quality in terms of HUFA content in aquatic and terrestrial insect prey. We then used bulk stable isotope analyses to estimate subsidy use by stream and riparian consumers coupled with compound‐specific stable isotope analyses, which allowed us to document consumer HUFA sources. Finally, in order to understand the nutritional importance of aquatic‐derived HUFAs for riparian consumers, we conducted manipulative diet experiments on Eastern Phoebe (Sayornis phoebe) chicks in the laboratory. Aquatic insects were significantly enriched in HUFAs, mainly in terms of eicosapentaenoic acid (EPA), compared with terrestrial insects. Stream fishes relied mainly upon aquatic resources, while insectivorous birds varied in their use of aquatic subsidies across sites. However, like stream fishes, Eastern Phoebe chicks received HUFAs from aquatic insects, even when they were heavily reliant upon terrestrial insects for their overall diet. In the laboratory, dietary HUFAs, such as those supplied by aquatic insects, increased the growth rate and condition of Eastern Phoebe chicks. This study demonstrates that aquatic and terrestrial subsidies are not nutritionally reciprocal from the perspective of consumers because aquatic resources are the main source of critical fatty acids for both stream and riparian consumers. It also confirms previous findings on the nutritional importance of HUFAs for riparian birds, demonstrating that an insectivorous riparian lifestyle influences avian nutritional needs. Finally, our findings raise the possibility that birds and other riparian insectivores may experience nutritional mismatches with terrestrial prey if they do not have access to high‐quality aquatic subsidies as a consequence of aquatic habitat degradation or shifts in consumer and resource phenology. A free Plain Language Summary can be found within the Supporting Information of this article.