Cilia, the hair-like protrusions that beat at high frequencies to propel a cell or move fluid around are composed of radially bundled doublet microtubules. In this study, we present a near-atomic resolution map of the Tetrahymena doublet microtubule by cryoelectron microscopy. The map demonstrates that the network of microtubule inner proteins weaves into the tubulin lattice and forms an inner sheath. From mass spectrometry data and de novo modeling, we identified Rib43a proteins as the filamentous microtubule inner proteins in the protofilament ribbon region. The Rib43a–tubulin interaction leads to an elongated tubulin dimer distance every 2 dimers. In addition, the tubulin lattice structure with missing microtubule inner proteins (MIPs) by sarkosyl treatment shows significant longitudinal compaction and lateral angle change between protofilaments. These results are evidence that the MIPs directly affect and stabilize the tubulin lattice. It suggests that the doublet microtubule is an intrinsically stressed filament and that this stress could be manipulated in the regulation of ciliary waveforms.

Microtubules are cytoskeletal structures involved in stability, transport and organization in the cell. The building blocks, the α- and β-tubulin heterodimers, form protofilaments that associate laterally into the hollow microtubule. Microtubule also exists as highly stable doublet microtubules in the cilia where stability is needed for ciliary beating and function. The doublet microtubule maintains its stability through interactions at its inner and outer junctions where its A- and B-tubules meet. Here, using cryo-electron microscopy, bioinformatics and mass spectrometry of the doublets of Chlamydomonas reinhardtii and Tetrahymena thermophila, we identified two new inner junction proteins, FAP276 and FAP106, and an inner junction-associated protein, FAP126, thus presenting the complete answer to the inner junction identity and localization. Our structural study of the doublets shows that the inner junction serves as an interaction hub that involves tubulin post-translational modifications. These interactions contribute to the stability of the doublet and hence, normal ciliary motility.

ABD) preferentially engages actin in the presence of mechanical load across actin filaments (''mechanoaccumulation''), while vinculin's ABD does not. Simultaneous optical trapping and confocal microscopy experiments demonstrate that a load of 1pN across actin activates a-catenin ABD binding. Atomic-resolution cryo-EM structures of the metavinculin ABD-actin (2.9Å ) and a-catenin ABD-actin (3.2Å ) complexes demonstrate both ABDs undergo major conformational changes upon actin engagement, prominently at their N-and C-termini, and their C-terminal regions differentially refold to bind distinct sites on the filament surface. A C-terminal truncation of a-catenin's ABD constitutively binds actin regardless of force, and a chimeric protein of vinculin's ABD featuring a-catenin's flexible termini gains mechanoaccumulation activity, suggesting the a-catenin C-terminus-actin interaction is necessary and sufficient for mechanically regulated binding. This work, for the first time, establishes a force-regulated actin-binding mechanism in structural detail, and lays the groundwork for the rational design of therapeutics targeting cytoskeletal mechanotransduction pathways.

Cilia are thin microtubule‐based protrusions of eukaryotic cells. The swimming of ciliated protists and sperm cells is propelled by the beating of cilia. Cilia propagate the flow of mucus in the trachea and protect the human body from viral infections. The main force generators of ciliary beating are the outer dynein arms (ODAs) which attach to the doublet microtubules. The bending of cilia is driven by the ODAs' conformational changes caused by ATP hydrolysis. Here, we report the native ODA complex structure attaching to the doublet microtubule by cryo‐electron microscopy. The structure reveals how the ODA complex is attached to the doublet microtubule via the docking complex in its native state. Combined with coarse‐grained molecular dynamic simulations, we present a model of how the attachment of the ODA to the doublet microtubule induces remodeling and activation of the ODA complex.

Proteomic exploration of the central pair Cilia and flagella are highly organized structures of eukaryotes which propel the cell motions or generate liquid flows around the cells. The central pair complex is located at the center of cilia and flagella. It is known to be essential for the regulation of beating of cilia and flagella, but its protein composition and architecture were poorly understood. By exploiting comprehensive mass spectrometry and several mutant strains of Chlamydomonas, we identified novel central pair proteins and mapped these proteins to the structure. Our model can be used as a foundation to understand the functions of the central pair complex.