The impact of disturbance on species diversity may be related to the spatial scales over which it occurs. Here I assess the impact of logging and ENSO (El Niño Southern Oscillation) -induced burning and forest isolation on the species richness (477 species out of more than 28,000 individuals) and community composition of butterflies and butterfly guilds using small (0.9 ha) plots nested within large (450 ha) landscapes. The landscapes were located in three habitat classes: (1) continuous, unburned forest; (2) unburned isolates surrounded by burned forest; and (3) burned forest. Plots with different logging histories were sampled within the two unburned habitat classes, allowing for independent assessment of the two disturbance factors (logging and burning). Disturbance within habitat classes (logging) had a very different impact on butterfly diversity than disturbance among habitat classes (due to ENSO-induced burning and isolation). Logging increased species richness, increased evenness, and lowered dominance. Among guilds based on larval food plants, the species richness of tree and herb specialists was higher in logged areas but their abundance was lower. Both generalist species richness and abundance was higher in logged areas. Among habitat classes, species richness was lower in burned forest and isolates than continuous forest but there was no overall difference in evenness or dominance. Among guilds, generalist species richness was significantly lower in burned forest and isolates than continuous forest. Generalist abundance was also very low in the isolates. There was no difference among disturbance classes in herb specialist species richness but abundance was significantly higher in the isolates and burned forest than in continuous forest. Tree specialist species richness was lower in burned forest than continuous forest but did not differ between continuous forest and isolates. The scale of assessment proved important in estimating the impact of disturbance on species richness. Within disturbance classes, the difference in species richness between primary and logged forest was more pronounced at the smaller spatial scale. Among disturbance classes, the difference in species richness between continuous forest and isolates or burned forest was more pronounced at the larger spatial scale. The lower levels of species richness in ENSO-affected areas and at the larger (landscape) spatial scale indicate that future severe ENSO events may prove one of the most serious threats to extant biodiversity.

Aim  Current estimates of species richness within rapidly evolving species flocks are often highly dependent on the species status of allopatric populations that differ in phenotypic traits. These traits may be unreliable indicators of biological species status and systematists may have inconsistently assigned species among lineages or locations on the basis of these traits, thus hampering comparative studies of regional species richness and speciation rates. Our aim was to develop a method of generating standardized estimates of regional species richness suitable for comparative analysis, and to use these estimates to examine the extent and consistency of species assignment of allopatric populations within rapidly evolving cichlid fish flocks present in three east African lakes. Location  Lakes Malawi, Victoria and Tanganyika. Methods  Using published taxon co‐occurrence data, a novel approach was employed to calculate standardized ‘minimum’ estimates of regional species richness for hard substrate associated complexes of cichlids within each of the lakes. Minimum estimates were based on an explicit assumption that if taxa present on equivalent habitats have disjunct distributions, then they are allopatric forms of the same species. These estimates were compared with current observed ‘high‐end’ regional species richness estimates for those complexes to determine the consistency of species assignment of allopatric populations between lineages within a lake. A ‘sympatry’ index was developed to enable comparisons of levels of species assignment of allopatric populations between‐lakes to be made. Results  Within each lake, the minimum and high‐end estimates for species richness were significantly correlated across complexes, indicating that the complexes that contain more recognized species contain the most genuine biological species. However, comparisons of complexes among lakes revealed considerable differences. For equivalent geographical areas, substantially higher proportions of recognized species were totally allopatric within the studied Lake Malawi and Lake Victoria complexes, than those of Lake Tanganyika. Main Conclusions  Among African lakes, levels of assignment to species status of allopatric populations were found to be distinctly different. It is unclear whether the discrepancies are a consequence of differences between the lake faunas in degrees of phenotypic divergence among allopatric populations, or are simply the result of inconsistent taxonomic practices. In either case, these results have considerable wider relevance for they emphasize that quantitative measures of regional and beta diversity are critically dependent on the species status of allopatric populations, an issue usually neglected in comparative studies of species richness. The technique introduced here can be used to standardize measures of regional diversity of lineages for comparative analyses, potentially enabling more accurate identification of processes influencing rates of speciation.

Sponge diversity and community composition in bathyal cold water coral reefs (CWRs) were examined at 500-900 m depth on the southeastern slopes of Rockall Bank and the northwestern slope of Porcupine Bank, to the west of Ireland in 2004 and 2005 with boxcores. A total of 104 boxcore samples, supplemented with 10 trawl/dredge attempts, were analyzed for the presence and abundance of sponges, using microscopical examination of (sub)samples of collected coral branches, and semi-quantitative macroscopic examination. Approximate minimum size of identified and counted sponge individuals was 1 mm. Literature data were added to the Porcupine Bank results to compensate for a less intensive sampling program in that location. Species richness and abundance were determined at local (sample diversity, pooled-sample diversity, local reef diversity), between-reef (diversity of two reef areas at 15 km distance), and regional scales (diversity of three reef areas over a distance of 200 km). Abiotic and biotic parameters including depth, the presence and cover of live coral, dead coral and sand, local reef, and orientation towards the nearest reef mound summit, were included in a constrained ordination technique (RDA); a Monte Carlo forward selection procedure was used to obtain significant predictors of variation in composition. The results of this analysis were compared with unconstrained ordination (PCA) and cluster analysis. The presence of live coral, depth and the local reefs C1 and C3 proved to be significant predictors of variation in sponge composition. The PCA and cluster analysis confirmed these results. Sample species richness was consistently heterogeneous from zero species and individuals up to 57 species and 90 individuals per (boxcore) sample. Species richness of local reefs determined from pooled samples showed the three localities studied to have similar species richness, namely 105-122 species in each location. Species richness was highest in samples with relatively low live coral cover. As in the RDA, live coral presence and depth appeared to be responsible for most of the variation observed in the cluster results. Cluster analysis of Bray-Curtis dissimilarity values of the pooled samples of all three reef localities using presence/absence data of all available samples indicated that distance appeared to structure the composition of the sponge assemblages of the three reef mound areas, but much less so within and among local reefs. Bathyal reefs of the regions to the west of Ireland were found to have a combined sponge species richness of 191 species, exceeding the richness of individual reef mound areas by c. 38-45%. Sponge presence in CWRs is clearly structured and controlled by biotic and abiotic factors. In particular, live coral presence appears a significant predictor of CWR sponge composition and diversity.

Logging is an issue of major conservation concern. Less than 5% of tropical forests are currently protected, and many of these are in so-called "paper parks." Many species may therefore depend on exploited forests, and management decisions concerning these forests will be a major determinant of their survival. An important aspect of forest management will entail the use of reliable, practical, and inexpensive indicator taxa to monitor exploitation. Here, butterflies are proposed as such indicators. Species, generic, and subfamily richness was significantly higher in logged than unlogged forest and community composition differed significantly at all three taxonomic levels (species, genus, and subfamily). Richness estimators were, furthermore, highly correlated among all three taxonomic levels. Significant individual indicator taxa were found at all three taxonomic levels, but the best overall taxa (highest indicator values) were found at the generic level and included the butterfly genera Ragadia and Paralaxita as indicators of unlogged forest and the genera Ypthima, Allotinus, and Athyma as indicators of logged forest. The use of genera instead of species presents a number of practical advantages. Identification is faster, easier, and more reliable. Genera can, furthermore, usually be identified "on the wing," thereby preventing accidental mortality due to capture.