Registries of clinical studies such as ClinicalTrials.gov are an important source of information. However, the process of manually entering metadata is prone to errors which impedes their use and thereby the overall usefulness of the registry. In this work, we propose a generic approach towards detection of errors in the metadata by using the Shapes Constraint Language for defining rule templates covering constraints regarding value type and cardinality. We developed a Python 3 algorithm for the automatic validation of 15 rule instances applied to the whole ClinicalTrials.gov database (355,862 studies; 27th October 2020) resulting in more than 5 million metadata verifications. Our results show a large number of errors in different metadata fields, such as i) missing values, ii) values not coming from a predefined set or iii) wrong cardinalities, can be detected using this approach. Since 2015 approximately 5% of all studies contain one or more errors. In the future, we will apply this technique to other registries and develop more complex rules by focusing on the semantics of the metadata. This could render the possibility of automatically correcting entries, increasing the value of registries of clinical studies.
Introduction: Due to an increasing demand for the initiation and control of non-invasive ventilation (NIV), digital algorithms are suggested to support therapeutic decisions and workflows in an ambulatory setting. The DIGIVENT project established and implemented such algorithms for patients with chronic hypercapnic respiratory failure due to chronic obstructive pulmonary disease (COPD) by a predefined process. Methods: Based on long-term clinical experience and guideline recommendations as provided by the German Respiratory Society, detailed graphical descriptions of how to perform NIV in stable COPD patients were created. Subsequently, these clinical workflows were implemented in the Business Process Model and Notation (BPMN) as one tool to formalize these workflows serving as input for an executable digital implementation. Results: We succeeded in creating an executable digital implementation that reflects clinical decision-making and workflows in digital algorithms. Furthermore, we built a user-friendly graphical interface that allows easy interaction with the DIGIVENT support algorithms. Conclusion: The DIGIVENT project established digital treatment algorithms and implemented a decision- and workflow-support system for NIV whose validation in a clinical cohort is planned.
Patient safety event (PSE) reports are an important source of information for analyzing risks in healthcare processes. However, the reports’ quality is often low due to missing or imprecise information. We work towards an automatic analysis of reports and quality evaluation. To leverage a suitable data representation of health IT-induced medication error reports, we apply the Shapes Constraint Language (SHACL). We define an ontology representing these reports and construct a corresponding SHACL graph. Three authors manually annotate and transform 20 textual reports to the SHACL representation. Furthermore, we use this representation to compute a quality score for each report. The results indicate the suitability of SHACL as a representation of health IT-induced medication error reports, which paves a path of automatically extracting information from PSE reports using text mining and transform them to SHACL for quality evaluation.
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