No abstract

Most subterranean animals are assumed to have evolved from surface ancestors following colonization of a cave system; however, very few studies have raised the possibility of “subterranean speciation” in underground habitats (i.e., obligate cave‐dwelling organisms [troglobionts] descended from troglobiotic ancestors). Numerous endemic subterranean diving beetle species from spatially discrete calcrete aquifers in Western Australia (stygobionts) have evolved independently from surface ancestors; however, several cases of sympatric sister species raise the possibility of subterranean speciation. We tested this hypothesis using vision (phototransduction) genes that are evolving under neutral processes in subterranean species and purifying selection in surface species. Using sequence data from 32 subterranean and five surface species in the genus Paroster (Dytiscidae), we identified deleterious mutations in long wavelength opsin (lwop), arrestin 1 (arr1), and arrestin 2 (arr2) shared by a sympatric sister‐species triplet, arr1 shared by a sympatric sister‐species pair, and lwop and arr2 shared among closely related species in adjacent calcrete aquifers. In all cases, a common ancestor possessed the function‐altering mutations, implying they were already adapted to aphotic environments. Our study represents one of the first confirmed cases of subterranean speciation in cave insects. The assessment of genes undergoing pseudogenization provides a novel way of testing modes of speciation and the history of diversification in blind cave animals.

Recent surveys of Australian arid-zone groundwater ecosystems have uncovered considerable species diversity and extreme endemism for the oniscidean isopod genus Haloniscus Chilton, 1920. Phylogenetic and species delimitation analyses have recognised several distinct species from the Great Artesian Basin springs in South Australia, inspiring a morphological reassessment of the genus and examination of specimens from the iconic Lake Eyre and Dalhousie Springs. We present a revised diagnosis of Haloniscus, transfer the genus from the family Scyphacidae to Philosciidae and describe four new species, H. fontanus Stringer, King & Taiti n. sp., H. microphthalmus Stringer, King & Taiti n. sp., H. rotundus Stringer, King & Taiti n. sp., and H. yardiyaensis Stringer, King & Taiti n. sp., based on combined morphological and molecular evidence. We compare the results of molecular-based species delimitation analyses with morphological data, provide distribution information, and present a key to the described species of Haloniscus. Two species presently included in Andricophiloscia Vandel, 1973, A. stepheni (Nicholls & Barnes, 1926) and A. pedisetosa Taiti & Humphreys, 2001, from Western Australia are also transferred to Haloniscus.

Amphipod crustaceans comprise a significant and enigmatic component of Australian groundwater ecosystems, particularly in the Pilbara region of Western Australia. Many amphipod species in the Pilbara, including species in the genus <i>Nedsia</i> <a href="#R1">Barnard & Williams, 1995</a>, are considered short range endemics, poorly or contentiously defined by taxonomic treatments based on morphology alone and have uncertain distributions as a consequence of this taxonomy. A modern systematic revision of <i>Nedsia</i> is presented here, utilising both molecular and morphological analyses alongside distributional data to delineate species. We describe 13 new species of <i>Nedsia</i>, confirm three existing species and synonymise eight previously described species. <i>Nedsia</i> species are confirmed to be functionally morphologically cryptic, with <i>COI</i> divergences at the 5&#x2013;20% level. We present comparatively reduced taxonomic descriptions for these cryptic amphipod species in an effort to provide an accelerated pathway for future taxonomic work. The research provides the basis for future environmental impact assessments involving <i>Nedsia</i> species and ongoing monitoring of the groundwater communities these form part of in the resource-rich Pilbara region.