An important aspect of High-Performance Computing (HPC) system design is the choice of main memory capacity. This choice becomes increasingly important now that 3D-stacked memories are entering the market. Compared with conventional Dual In-line Memory Modules (DIMMs), 3D memory chiplets provide better performance and energy efficiency but lower memory capacities. Therefore, the adoption of 3D-stacked memories in the HPC domain depends on whether we can find use cases that require much less memory than is available now.This study analyzes the memory capacity requirements of important HPC benchmarks and applications. We find that the High-Performance Conjugate Gradients (HPCG) benchmark could be an important success story for 3D-stacked memories in HPC, but High-Performance Linpack (HPL) is likely to be constrained by 3D memory capacity. The study also emphasizes that the analysis of memory footprints of production HPC applications is complex and that it requires an understanding of application scalability and target category, i.e., whether the users target capability or capacity computing. The results show that most of the HPC applications under study have per-core memory footprints in the range of hundreds of megabytes, but we also detect applications and use cases that require gigabytes per core. Overall, the study identifies the HPC applications and use cases with memory footprints that could be provided by 3D-stacked memory chiplets, making a first step toward adoption of this novel technology in the HPC domain. CCS Concepts: r Computer systems organization → Distributed architectures; r Hardware → Analysis and design of emerging devices and systems; Memory and dense storage; Additional
This paper presents and evaluates a method to predict DRAM uncorrected errors, a leading cause of hardware failures in large-scale HPC clusters. The method uses a random forest classifier, which was trained and evaluated using error logs from two years of production of the MareNostrum 3 supercomputer. By enabling the system to take measures to mitigate node failures, our method reduces lost compute time by up to 57%, a net saving of 21,000 node-hours per year. We release all source code as open source.We also discuss and clarify aspects of methodology that are essential for a DRAM prediction method to be useful in practice. We explain why standard evaluation metrics, such as precision and recall, are insufficient, and base the evaluation on a cost-benefit analysis. This methodology can help ensure that any DRAM error predictor is clear from training bias and has a clear cost-benefit calculation.
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Energy consumption is by far the most important contributor to HPC cluster operational costs, and it accounts for a significant share of the total cost of ownership. Advanced energy-saving techniques in HPC components have received significant research and development effort, but a simple measure that can dramatically reduce energy consumption is often overlooked. We show that, in capacity computing, where many small to medium-sized jobs have to be solved at the lowest cost, a practical energy-saving approach is to scale-in the application on large-memory nodes. We evaluate scaling-in; i.e. decreasing the number of application processes and compute nodes (servers) to solve a fixedsized problem, using a set of HPC applications running in a production system. Using standard-memory nodes, we obtain average energy savings of 36%, already a huge figure. We show that the main source of these energy savings is a decrease in the node-hours (node hours = #nodes × exe time), which is a consequence of the more efficient use of hardware resources.Scaling-in is limited by the per-node memory capacity. We therefore consider using large-memory nodes to enable a greater degree of scaling-in. We show that the additional energy savings, of up to 52%, mean that in many cases the investment in upgrading the hardware would be recovered in a typical system lifetime of less than five years.
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