The index of biotic integrity (IBI) integrates 12 measures of stream fish assemblages for assessing water resource quality. Initially developed and tested in the Midwest, the IBI recently was adapted for use in western Oregon, northeastern Colorado, New England, the Appalachians of West Virginia and Virginia, and northern California. The concept also was extended to Louisiana estuaries. In regions of low species richness, the IBI proved difficult to apply and often required extensive modification. Adapting the 1BI to those regions required that metrics be replaced, deleted, or added to accommodate regional differences in fish distribution and assemblage structure and function. Frequently replaced metrics include: proportion of individuals as green sunfish (Lepomis cyanellus), proportion of individuals as insectivorous cyprinids, proportion of individuals as hybrids, and number and identity of sunfish and darter species. The proportion of individuals as top carnivore metric was often deleted. Metrics added include total fish biomass and the number and identity of minnow species. These modifications generally followed the original IBI concept and its theoretical underpinnings. Problems remain in establishing tolerance rankings and scoring criteria, and adjusting scoring criteria for gradient differences in streams of similar size. The IBI holds promise for direct biological monitoring because of its strong ecological foundation and flexibility. Vermont, Tennessee Valley Authority, Ohio, Kentucky, and Illinois have incorporated the IBI into their monitoring or standards programs. The IBI thus serves as a quantitative, biological goal for water resource management.

Fish assemblages were sampled in 195 randomly selected lakes in the northeastern United States during the summers of 1991-1994. Most lakes in northern Maine had three to seven minnow species, constituting 40-80% of species in each lake. Lakes in New Jersey, southern New York, and southern New England rarely had minnows, other than golden shiner (Notemigonus crysoleucas). Lakes in the Adirondacks and the remainder of northern New England had intermediate numbers. We examined minnow native ranges and autecology and evaluated species richness related to littoral predators and human disturbance. Sample data suggested alteration in the minnow assemblages over much of the region. The most consistent factor related to minnow species richness was the presence of littoral predators. Median number of minnow species was two in lakes lacking predators and zero in lakes with predators. Non-native predators, especially Micropterus spp., have been introduced throughout the Northeast; 69% of the sampled lakes had non-native predators. In the absence of predators, minnow species declined with increased human activity in the watershed and along lake shorelines. Only in northern Maine did lake minnow assemblages seem relatively intact.

An index of biological integrity (IBI) was developed for streams in the Hudson, Delaware, and Susquehanna River drainages in the northeastern United States based on fish assemblage data from the Mohawk River drainage of New York. The original IBI, developed for streams in the U.S. Midwest, was modified to reflect the assemblage composition and structure present in Mid‐Atlantic Slope drainages. We replaced several of the Midwestern IBI metrics and criteria scores because fishes common to the Midwest are absent from or poorly represented in the Northeast and because stream fish assemblages in the Northeast are less rich than those in the Midwest. For all replacement metrics we followed the ecology‐based rationale used in the development of each of the metrics of the Midwestern IBI so that the basic theoretical underpinnings of the IBI remained unchanged. The validity of this modified IBI is demonstrated by examining the quality of streams in the Hudson, Delaware, and lower Susquehanna River basins. The relationships between the IBI and other indicators of environmental quality are examined using data on assemblages of fish and benthic macroinvertebrates and on chemical and physical stream characteristics obtained during 1993‐2000 by the U.S. Geological Survey's National Water Quality Assessment Program in these three river basins. A principal components analysis (PCA) of chemical and physical variables from 27 sites resulted in an environmental quality gradient as the primary PCA axis (eigenvalue, 0.41). Principal components analysis site scores were significantly correlated with such benthic macroinvertebrate metrics as the percentage of Ephemeroptera, Plecoptera, and Trichoptera taxa (Spearman R = −0.66, P < 0.001). Index of biological integrity scores for sites in these three river basins were significantly correlated with this environmental quality gradient (Spearman R = −0.78, P = 0.0001). The northern Mid‐Atlantic Slope IBI appears to be sensitive to environmental degradation in all three of the river basins addressed in this study. Adjustment of metric scoring criteria may be warranted, depending on composition of fish species in streams in the study area and on the relative effort used in the collection of fish assemblage data.

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