Several RNA virus genera belonging to the Virgaviridae and Flexiviridae families encode proteins organized in a triple gene block (TGB) that facilitate cell-to-cell and long-distance movement. The TGB proteins have been traditionally classified as hordei-like or potex-like based on phylogenetic comparisons and differences in movement mechanisms of the Hordeivirus and Potexvirus spp. However, accumulating data from other model viruses suggests that a revised framework is needed to accommodate the profound differences in protein interactions occurring during infection and ancillary capsid protein requirements for movement. The goal of this article is to highlight common features of the TGB proteins and salient differences in movement properties exhibited by individual viruses encoding these proteins. We discuss common and divergent aspects of the TGB transport machinery, describe putative nucleoprotein movement complexes, highlight recent data on TGB protein interactions and topological properties, and review membrane associations occurring during subcellular targeting and cell-to-cell movement. We conclude that the existing models cannot be used to explain all TGB viruses, and we propose provisional Potexvirus, Hordeivirus, and Pomovirus models. We also suggest areas that might profit from future research on viruses harboring this intriguing arrangement of movement proteins.
A study of molecular diversity was carried out on 136 sugar beets infected with Beet necrotic yellow vein virus (BNYVV, Benyvirus) collected worldwide. The nucleotide sequences of the RNA-2-encoded CP, RNA-3-encoded p25 and RNA-5-encoded p26 proteins were analysed. The resulting phylogenetic trees allowed BNYVV to be classified into groups that show correlations between the virus clusters and geographic origins. The selective constraints on these three sequences were measured by estimating the ratio between synonymous and non-synonymous substitution rates (v) with maximum-likelihood models. The results suggest that selective constraints are exerted differently on the proteins. CP was the most conserved, with mean v values ranging from 0?12 to 0?15, while p26 was less constrained, with mean v values ranging from 0?20 to 0?33. Selection was detected in three amino acid positions of p26, with v values of about 5?0. The p25 sequences presented the highest mean v values (0?36-1?10), with strong positive selection (v=4?7-54?7) acting on 14 amino acids, and particularly on amino acid 68, where the v value was the highest so far encountered in plant viruses.
The family Virgaviridae is a family of plant viruses with
rod-shaped virions, a ssRNA genome with a 3′-terminal tRNA-like structure
and a replication protein typical of alpha-like viruses. Differences in the
number of genome components, genome organization and the mode of transmission
provide the basis for genus demarcation. Tobacco mosaic virus (genus
Tobamovirus) was the first virus to be discovered (in
1886); it is present in high concentrations in infected plants, is extremely
stable and has been extensively studied. This is a summary of the International
Committee on Taxonomy of Viruses (ICTV) Report on the taxonomy of the
Virgaviridae, which is available at www.ictv.global/report/virgaviridae.
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