The effect of using a realistic model for the electrostatic forces
on the calculated structures of molecular
crystals is explored by using atomic multipoles derived from an SCF
6-31G** wave function. This was
tested on a wide ranging database of 40 rigid organic molecules
containing C, H, N, and O atoms, including
nucleic acid bases, nonlinear optic materials, azabenzenes,
nitrobenzenes, and simpler molecules. The
distributed multipole electrostatic model, plus an empirical
repulsion-dispersion potential, was able to
successfully reproduce the lattice vectors and available heats of
sublimation of the experimental room
temperature structure in almost all cases. Scaling the
electrostatic energy to allow for the effect of electron
correlation on the molecular charge density generally improved the
lattice energies and the calculated structures
to a lesser extent. However, omitting the anisotropic multipole
moments usually gave very poor, sometimes
qualitatively wrong structures, emphasizing the sensitivity of these
crystal structures to the electrostatic forces.
We also investigated the sensitivity of the structures to the
empirical repulsion-dispersion potential parameters
by attempting to optimize these. Since the experimental structures
are mainly reproduced to within the errors
that could be attributed to the use of static minimization and rigid
molecules, it appears that going beyond the
atomic charge model to a realistic electrostatic model is a key
development in the modeling of the crystal
structures of polar and hydrogen-bonded molecules.
We examine the fundamental processes involved in the hydrothermal synthesis of silicates, using a range of computational techniques. We report ab initio calculations of the structures and energies of silica fragments. We estimate hydration energies by using both molecular mechanics methodologies and dielectric screening techniques. Detailed molecular mechanics calculations are reported for the interactions between solvated fragments of zeolitic structures and template molecules, emphasizing the role of the template in modifying fragments so that their structures are closer to those observed in zeolite crystals.
Density functional theory (DFT) and force-field-based calculations have been carried out on the breathing metal-organic framework MIL-53(Cr) in both its large-and narrow-pore forms. In its sorbate-free form, the large-pore structure appears to be the global minimum. We develop a hybrid force field combining ionicmodel potentials, used for modeling inorganic solids, with molecular mechanics terms for the organic part. This gives an energy difference of close to 30 kJ mol -1 between the large-and narrow-pore forms. Calculations in which water molecules are introduced into the structures illustrate how the energetics of physisorption are able to drive the pore breathing process, with the water molecules, being more strongly stabilized in the narrow-pore form, favoring pore closure at loadings of more than one molecule per unit cell.
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