Methods that integrate population-level sampling from multiple taxa into a single community-level analysis are an essential addition to the comparative phylogeographic toolkit. Detecting how species within communities have demographically tracked each other in space and time is important for understanding the effects of future climate and landscape changes and the resulting acceleration of extinctions, biological invasions, and potential surges in adaptive evolution. Here, we present a statistical framework for such an analysis based on hierarchical approximate Bayesian computation (hABC) with the goal of detecting concerted demographic histories across an ecological assemblage. Our method combines population genetic data sets from multiple taxa into a single analysis to estimate: 1) the proportion of a community sample that demographically expanded in a temporally clustered pulse and 2) when the pulse occurred. To validate the accuracy and utility of this new approach, we use simulation cross-validation experiments and subsequently analyze an empirical data set of 32 avian populations from Australia that are hypothesized to have expanded from smaller refugia populations in the late Pleistocene. The method can accommodate data set heterogeneity such as variability in effective population size, mutation rates, and sample sizes across species and exploits the statistical strength from the simultaneous analysis of multiple species. This hABC framework used in a multitaxa demographic context can increase our understanding of the impact of historical climate change by determining what proportion of the community responded in concert or independently and can be used with a wide variety of comparative phylogeographic data sets as biota-wide DNA barcoding data sets accumulate.

13/01/15 meb. Accepted version, Ok to add

Spatially continuous data products are essential for a number of applications including climate and hydrologic modeling, weather prediction, and water resource management. In this work, a distance-weighted interpolation method used to map daily rainfall and temperature in Hawaii is described and assessed. New high-resolution (250 m) maps were developed for daily rainfall and daily maximum (Tmax) and minimum (Tmin) near-surface air temperature for the period 1990–2014. Maps were produced using climatologically aided interpolation, in which station anomalies were interpolated using an optimized inverse distance weighting approach and then combined with long-term means to produce daily gridded estimates. Leave-one-out cross validation was performed to assess the quality of the final daily grids. The median absolute prediction error for rainfall was 0.1 mm with an average overprediction (+0.6 mm) on days when total rainfall was less than 1 mm. On days with total rainfall greater than 1 mm, median absolute prediction errors were 2 mm and rainfall was typically underpredicted above the 10-mm threshold. For daily temperature, median absolute prediction errors were 3.1° and 2.8°C for Tmax and Tmin, respectively. On average, this method overpredicted Tmax (+1.1°C) and Tmin (+1.5°C), and errors varied considerably among stations. Errors for all variables exhibited significant seasonal variations. However, the annual range of errors was small. The methods presented here provide an effective approach for mapping daily weather fields in a topographically diverse region and improve on previous products in their spatial resolution, time period of coverage, and use of data.

Abstract-We propose a novel approach for sharing cluster resources among competing jobs. The key advantage of our approach over current solutions is that it increases cluster utilization while optimizing a user-centric metric that captures both notions of performance and fairness. We motivate and formalize the corresponding resource allocation problem, determine its complexity, and propose several algorithms to solve it in the case of a static workload that consists of sequential jobs. Via extensive simulation experiments we identify an algorithm that runs quickly, that is always on par with or better than its competitors, and that produces resource allocations that are close to optimal. We find that the extension of our approach to parallel jobs leads to similarly good results. Finally, we explain how to extend our work to dynamic workloads.