There are extensive interactions between viruses and the host DNA damage response (DDR) machinery. The outcome of these interactions includes not only direct effects on viral nucleic acids and genome replication, but also the activation of host stress response signalling pathways that can have further, indirect effects on viral life cycles. The non-homologous end-joining (NHEJ) pathway is responsible for the rapid and imprecise repair of DNA double-stranded breaks in the nucleus that would otherwise be highly toxic. Whilst directly repairing DNA, components of the NHEJ machinery, in particular the DNA-dependent protein kinase (DNA-PK), can activate a raft of downstream signalling events that activate antiviral, cell cycle checkpoint and apoptosis pathways. This combination of possible outcomes results in NHEJ being pro- or antiviral depending on the infection. In this review we will describe the broad range of interactions between NHEJ components and viruses and their consequences for both host and pathogen.

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The type I interferon (IFN-I) response to virus infection is initiated by the detection of nucleic acids by intracellular pattern recognition receptors (PRRs). The sensing of DNA viruses by PRRs is carried out by a number of DNA-binding PRRs that signal via the adaptor protein stimulator of interferon genes (STING) to drive IFN-I transcription. We previously described the role of DNA-dependent protein kinase (DNA-PK) as a viral DNA sensor in murine fibroblasts. In this study we show that DNA-PK is essential for the host response to DNA and DNA viruses in human fibroblasts. In the absensce of the catalytic subunit of the DNA-PK heterotrimer, DNA-PKcs, fibroblasts are deficient in their ability to activate a IFN-I response to DNA. DNA-PKcs is activated rapidly following exogenous DNA transfection or DNA virus infection and is required for signalling via STING and the kinase TBK-1 to the transcription factor interferon regulator factor 3 (IRF-3). Most wild-type DNA viruses combat intracellular DNA PRRs using immunomodulatory proteins encoded in their genomes and are effective at blocking IFN-I responses in infected cells. Here we make use of attenutated vaccina and herpes simplex 1 viruses that are lacking the immunomodulators that target DNA sesining mechanisms. We show that DNA-PKcs can sense these viruses and is required for triggering the IFN-I response in infected cells. These data cement the role of DNA-PK in the sensing of DNA virus infections in human cells.

To mount an efficient interferon response to virus infection, intracellular pattern recognition receptors (PRRs) sense viral nucleic acids and activate anti-viral gene transcription. The mechanisms by which intracellular DNA and DNA viruses are sensed are relevant not only to antiviral innate immunity, but also to autoinflammation and anti-tumour immunity through initiation of sterile inflammation by self-DNA recognition. The PRRs that directly sense and respond to viral or damaged self-DNA function by signalling to activate interferon regulatory factor (IRF)-dependent type one interferon (IFN-I) transcription. We and others have previously defined DNA-dependent protein kinase (DNA-PK) as an essential component of the DNA-dependent antiviral innate immune system. Here, we show that DNA-PK is essential for STING-dependent IFN-I responses in human cells during stimulation with exogenous DNA and infection with DNA viruses.