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Relationships between taxonomic composition of shallow epilithic algal communities and nine environmental variables in 32 lakes of different trophic states in Ireland were explored using gradient analysis. A canonical correspondence analysis using four representative environmental variables, alkalinity (correlated with pH and conductivity), maximum phytoplankton chl a (CHL max ) (correlated with total P, total N, and chl), turbidity, and water color explained 21% of the variance in taxa distributions. The first two axes were significant and accounted for 77% of the variance in the periphyton-environmental relationship. The first axis was strongly related to alkalinity and color, which reflected geology and land use in the watersheds. The second axis was most correlated with CHL max , and separation of lakes corresponded to their Organization for Economic Cooperation and Development (OECD) trophic classification based on water chemistry. Eutrophic lakes were characterized by cyanobacteria taxa and Stigeoclonium sp. Diatoms and desmids were generally more abundant in oligotrophic and mesotrophic lakes. Values for diatom trophic indices were poor indicators of trophic state. Weighted averaging regression and calibration techniques were used to develop transfer functions between 84 taxa and total P, total N, and CHL max . The total P inference model predicted OECD trophic classification correctly for 84% of the lakes. Values for taxa preferences resulting from such models can provide the foundation for biomonitoring schemes using extant periphyton communities. The turnover time of periphyton taxa should integrate changes in environmental conditions at a temporal scale intermediate to surface-sediment fossil diatom assemblages and water column variables, which may be more appropriate for detecting annual changes.