doi: bioRxiv preprint their components rapidly with the surrounding medium (Hyman et al., 2014;. Most of the liquid condensates possess common characteristics, which include their formation mechanism as well as their physical properties. For instance, multivalent proteins or nucleic acids associate through weak intermolecular interactions and reach a solubility limit to form liquid condensates (Banani et al., 2017;. These condensates are highly mobile, spherical, but get deformed on physical contact, fuse and eventually relax back to their spherical shape (Brangwynne et al., 2009;Brangwynne et al., 2011;Molliex et al., 2015;Nott et al., 2015). Several proteins undergoing LLPS, however, contain intrinsically disordered regions (IDRs) that are closely associated with prion-like domains (PLDs) and low complexity domains (LCDs) (
The global transcription factor, p53, is a master regulator of gene expression in cells. Mutations in the TP53 gene promote unregulated cell growth through the inactivation of downstream effectors of the p53 pathway. In fact, mutant p53 is highly prone to misfolding and frequently resides inside the cell as large aggregates, causing loss of physiological function of the tumor-suppressor protein. Here, we review the plausible reasons for functional loss of p53, including amyloid formation leading to unhindered cancer progression. We discuss previous as well as recent findings regarding the amyloid formation of p53 in vitro and in vivo. We elaborate on prion-like properties of p53 amyloids and their possible involvement in cancer progression. Because the p53 pathway is historically most targeted for the development of anticancer therapeutics, we have also summarized some of the recent approaches and advances in reviving the antiproliferative activities of wild-type p53. In this Perspective, we provide insight into understanding p53 as a prion-like protein and propose cancer to be recognized as an amyloid or prion-like disease.
Liquid-liquid phase separation (LLPS) has emerged as a crucial biological mechanism for sequestering macromolecules (such as proteins and nucleic acids) into membraneless organelles in cells. Unstructured and intrinsically disordered domains are known to facilitate multivalent interactions driving protein LLPS. We hypothesized that LLPS could be an intrinsic property of proteins/polypeptides at their high intermolecular interaction regime. To examine this, we studied many (a total of 23) proteins/polypeptides with different structures and sequences for LLPS study using molecular crowder polyethylene glycol (PEG-8000). We showed that all proteins and even highly charged polypeptides (under study) can undergo liquid condensate formation, however with different phase space and conditions. Using a single component and combinations of protein multicomponent (co-LLPS) systems, we establish that a variety of intermolecular interactions can drive proteins/polypeptides LLPS.
The involvement of
α-synuclein (α-Syn) amyloid formation
in Parkinson’s disease (PD) pathogenesis is supported by the
discovery of α-Syn gene (SNCA) mutations linked with familial
PD, which are known to modulate the oligomerization and aggregation
of α-Syn. Recently, the A53V mutation has been discovered, which
leads to late-onset PD. In this study, we characterized for the first
time the biophysical properties of A53V, including the aggregation
propensities, toxicity of aggregated species, and membrane binding
capability, along with those of all familial mutations at the A53
position. Our data suggest that the A53V mutation accelerates fibrillation
of α-Syn without affecting the overall morphology or cytotoxicity
of fibrils compared to those of the wild-type (WT) protein. The aggregation
propensity for A53 mutants is found to decrease in the following order:
A53T > A53V > WT > A53E. In addition, a time course aggregation
study
reveals that the A53V mutant promotes early oligomerization similar
to the case for the A53T mutation. It promotes the largest amount
of oligomer formation immediately after dissolution, which is cytotoxic.
Although in the presence of membrane-mimicking environments, the A53V
mutation showed an extent of helix induction capacity similar to that
of the WT protein, it exhibited less binding to lipid vesicles. The
nuclear magnetic resonance study revealed unique chemical shift perturbations
caused by the A53V mutation compared to those caused by other mutations
at the A53 site. This study might help to establish the disease-causing
mechanism of A53V in PD pathology.
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