The first written reports on embryonic diapause in the European roe deer (Capreolus capreolus) date back to 1843 and 1854. While the rut takes place in July/August, rapid embryo elongation and implantation take place in December/January, after a five month period of embryonic diapause. The post-implantation development lasts another five months and an average of two fawns are born in May. As fertilization and subsequent implantation are decoupled, the roe deer offers the opportunity to study changes in hormones, embryonic and endometrial morphology and transcriptome dynamics, as well as the uterine microenvironment in a high time-dimension. So far, it has been shown that peripheral increases in prolactin, estradiol-17β and progesterone are a consequence, rather than the cause of reactivation of embryo development. Increased uterine secretions and the presence of embryonic cell organelles coincide with embryo elongation. This suggests that the "quiet embryo" hypothesis might hold for diapausing embryos. The factors controlling embryonic developmental pace in the roe deer are yet to be identified. We propose a multi-omics approach to determine the temporal molecular changes during diapause, prior to embryo elongation, which morphologically marks the reactivation of embryo development, and upon elongation. Thereby, we will obtain insights into the molecular mechanisms and environmental cues that inhibit and drive cell proliferation. By data integration, we aim at identifying the origin of the factors associated with reduced embryonic developmental pace. The knowledge of a species-independent mechanism driving embryo development past the blastocyst stage is of high interest to reproductive biologists and for species conservation programs.

The phenomenon of embryonic diapause has been reported to possibly affect ovarian follicular development. The aim of the current study was to identify the impact of the embryonic diapause period on follicle number and oocyte quality in the European roe deer (Capreolus capreolus). In this species, the embryo undergoes five months of developmental delay. We have determined the antral follicle count (AFC), oocyte morphological quality, oocyte meiotic resumption capacity and the transcriptome profile in immature (GV) and in vitro matured (MII) oocytes obtained during embryonic diapause and after embryo reactivation. A drop in AFC, number of oocytes suitable for in vitro maturation and oocytes reaching the MII stage was observed after embryonic reactivation. A large impact of the diapause period was evident when MII oocytes were compared against GV oocytes using an RNA-seq approach. A total of 1028 genes significantly differed between MII and GV oocytes during diapause and 1795 genes after reactivation. These genes included PDE3A and SOD2, known for being involved in oocyte meiotic arrest and oxidative stress. In addition, tumour-related genes included NDRG3, NCSTN and UGDH, which have been associated with cell proliferation, migration and metabolism, were found. Comparing diapause versus reactivation, differential transcript abundance in both GV and MII oocytes was observed (44 and 32 differentially expressed genes, respectively). Our results suggest that the embryonic diapause and reactivation periods modulate follicular dynamics, influencing the oocyte towards lower quality after reactivation. This is may be related to increased apoptosis, abnormal mitochondria function/structure and metabolic dysfunction in the maturing oocyte.