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The arrival in Australia of Europeans and the species they brought with them initiated a sharp decline in native mammalian biodiversity. Consequently, one-third of the original or pre-European terrestrial mammal fauna is now extinct or threatened with extinction. Although the distributional ranges of many Australian mammals have contracted markedly, modern distributions are frequently used as baselines for conservation management and understanding ecological requirements. However, these often poorly reflect pre-European distributions, particularly in areas where biodiversity declines were rapid and occurred soon after European arrival. Here we analyse two late Holocene mammalian assemblages from Fleurieu Peninsula, South Australia, and reconstruct the pre-European terrestrial non-volant mammal fauna. The region was previously estimated to have lost perhaps 30% of its original terrestrial non-volant mammal fauna, but our results indicate a loss of almost 50%. We provide the first local records of the murids Mastacomys fuscus, Pseudomys australis, P. gouldii, P. novaehollandiae and P. shortridgei, and confirm the past occurrence of the now-extinct Conilurus albipes. Our study contributes new knowledge of species biogeography and ecology and will help refine restoration targets.

Short summary 8Non-invasive genetic sampling using scats has a well established role in conservation biology; yet is rarely applied to lizard scats. We evaluated various storage and DNA 10 extraction methods and identified a reliable method of deriving genotypes and sequences 11 from gidgee skink scats. Results highlight the opportunity for using scat derived DNA in 12 lizard studies, particularly for species that deposit scats in piles. 13 Running header

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The Wellington Caves were the first Australian locality from which Europeans collected and analysed vertebrate fossils. Within this system, Cathedral Cave contains Australia's stratigraphically deepest sequence of fossil‐bearing infill sediments, the age and depositional history of which has been poorly understood. Here we present results from a new excavation of the upper 4.2 m of the deposit, reanalysing the stratigraphy, petrography, sedimentology and geochemistry, and employing optically stimulated luminescence dating, radiocarbon dating and Bayesian age modelling to establish a robust chronology. We recognise 13 sedimentary layers and sublayers in two stratigraphic units. Unit 2 accumulated between 72 000 ± 5000 and 38 000 ± 7000 years ago as sediments and animals entered through a now‐blocked ceiling hole. Accumulation halted for around 30 000 years when the hole closed. Unit 1 accumulated when deposition was reinitiated around 7000 ± 2000 years ago, continuing through to a few hundred years ago. Our chronology refutes earlier dating of the deposit, which suggested that extinct Pleistocene megafauna taxa persisted locally until the Last Glacial Maximum. It confirms the deposit as one of the few in Australia that formed during the interval of major environmental upheaval marked by the arrival of humans, variable climate and the extinction of many megafaunal species.