<p><strong>Abstract.</strong> In this paper, we investigate the usage of unmanned aerial vehicles (UAV) to assess the crop geometry with special focus on the crop height extraction. Crop height is classified as a reliable trait in crop phenotyping and recognized as a good indicator for biomass, expected yield, lodging or crop stress. The current industrial standard for crop height measurement is a manual procedure using a ruler, but this method is considered as time consuming, labour intensive and subjective. This study investigates methods for reliable and rapid deriving of the crop height from high spatial, spectral and time resolution UAV data considering the influences of the reference surface and the selected crop height generation method to the final calculation. To do this, we performed UAV missions during two winter wheat growing seasons and generate point clouds from areal images using photogrammetric methods. For the accuracy assessment we compare UAV based crop height with ruler based crop height as current industrial standard and terrestrial laser scanner (TLS) based crop height as a reliable validation method. The high correlation between UAV based and ruler based crop height and especially the correlation with TLS data shows that the UAV based crop height extraction method can provide reliable winter wheat height information in a non-invasive and rapid way. Along with crop height as a single value per area of interest, 3D UAV crop data should provide some additional information like lodging area, which can also be of interest in the plant breeding community.</p>

Background: To ensure further genetic gain, genomic approaches in plant breeding rely on precise phenotypic data, describing plant structure, function and performance. A more precise characterization of the environment will allow a better dealing with genotype-by-environment-by-management interactions. Therefore, space and time dependencies of the crop production processes have to be considered. The use of novel sensor technologies has drastically increased the amount and diversity of phenotypic data from agronomic field trials. Existing data management systems either do not consider space and time, are not customizable to individual needs such as field trial handling, or have restricted availability. Hence, we propose an integrative data management and information system (DMIS) for handling of traditional and novel sensor-based phenotypic, environmental and management data. The DMIS must be customizable, applicable and scalable from individual users to organizations. Results: Key element of the system is a dynamic PostgreSQL database with GIS-extension, capable of importing, storing and managing all types of data including images. The database references every structural database object and measurement in a threefold approach with semantic, spatial and temporal reference. Timestamps and geo-coordinates allow automated linking of all data. Traits can be precisely defined individually or uploaded as predefined lists. Filtering and selection routines allow compilation of all data for visualization via tables, charts or maps and for export and external statistical analysis. New possibilities of environmental information-based planning of field trials, weatherguided phenotyping and data analysis for outlier or hot-spot detection are demonstrated. Conclusions: The DMIS supports users in handling experimental field trials with crop plants and modern phenotyping methods. It focuses on linking all space and time dependent processes of plant production. Weather, soil and management, as well as growth and yield formation of the plants can be depicted, thus allowing a more precise interpretation of the results in relation to environment and management. Breeders, extension specialists, official testing agencies and agricultural scientists are assisted in all steps of a typical workflow with planning, designing, conducting, controlling and analyzing field trials to generate new information for decision support in the crop improvement process.