UK Biobank is a large-scale prospective epidemiological study with all data accessible to researchers worldwide. It is currently in the process of bringing back 100,000 of the original participants for brain, heart and body MRI, carotid ultrasound and low-dose bone/fat x-ray. The brain imaging component covers 6 modalities (T1, T2 FLAIR, susceptibility weighted MRI, Resting fMRI, Task fMRI and Diffusion MRI). Raw and processed data from the first 10,000 imaged subjects has recently been released for general research access. To help convert this data into useful summary information we have developed an automated processing and QC (Quality Control) pipeline that is available for use by other researchers. In this paper we describe the pipeline in detail, following a brief overview of UK Biobank brain imaging and the acquisition protocol. We also describe several quantitative investigations carried out as part of the development of both the imaging protocol and the processing pipeline.

We investigated the relationship between individual subjects’ functional connectomes and 280 behavioral and demographic measures, in a single holistic multivariate analysis relating imaging to non-imaging data from 461 subjects in the Human Connectome Project. We identified one strong mode of population co-variation; subjects were predominantly spread along a single “positive-negative” axis, linking lifestyle, demographic and psychometric measures to each other and to a specific pattern of brain connectivity.

SignificanceWe address the important question of the temporal organization of large-scale brain networks, finding that the spontaneous transitions between networks of interacting brain areas are predictable. More specifically, the network activity is highly organized into a hierarchy of two distinct metastates, such that transitions are more probable within, than between, metastates. One of these metastates represents higher order cognition, and the other represents the sensorimotor systems. Furthermore, the time spent in each metastate is subject-specific, is heritable, and relates to behavior. Although evidence of non–random-state transitions has been found at the microscale, this finding at the whole-brain level, together with its relation to behavior, has wide implications regarding the cognitive role of large-scale resting-state networks.