An efficient method has been developed to synthesize well-aligned multi-walled carbon nanotubes (MWCNTs) on a conductive Ta substrate by chemical vapour deposition (CVD). Free-standing MWCNTs arrays were functionalized through electrochemical oxidation with the formation of hydroxyl and carboxyl functional groups. Using a new oven drying technique, we demonstrate that the unidirectionally aligned and laterally spaced geometry of the CNT arrays can be retained after being subjected to each step of electrochemical modification. Samples were analyzed by using a field emission scanning electron microscope (SEM), transmission electron microscope (TEM), Fourier transformed infrared (FTIR) and Raman spectroscopy. Useful electrochemical methods for the synthesis of various gold nanostructures onto the aligned MWCNTs were then presented for the first time. The results demonstrated that flowerlike nanoparticle arrays, nanosheets and nanoflowers were obtained on the aligned CNTs under different experimental conditions. These kinds of aligned-CNT/Au nanostructures hybrid materials introduced by these efficient and simple electrochemical methods could lead to development of a new generation device for ultrasensitive catalytic and biological application.