In this laboratory study different combinations of bed (sand, pebble gravel [gravel], and a mix of sand and gravel) and flow (typical and overtopping) were experimented with to investigate the impact of porous deflectors in flow diversity, water quality, and fish performance in prismatic open channels. Deflectors changed the gradually varied flow to a rapidly varied flow, as a sudden change in the water depth was observed at the deflectors, and this change was large for smooth beds. With the presence of gravel, the scouring near the downstream deflector was almost twice that of the sand bed, and with the scouring at its own upstream deflector, irrespective of whether the flow was typical or overtopping. This behavior was a result of sand mobilization due to shear stress and sand mobilization aided gravel transport. The mixed bed showed less gravel movement compared to the gravel-only bed. The percentage of sediment washed out was minor for all bed scenarios, indicating that sediment transport was local. Relative to the sand bed without deflectors (representing a typical urban canal), deflectors resulted in reduced and improved water quality (in terms of sediment load) for sand, and mixed bed, respectively. The fishes found refuge and were comfortable in the pool areas created by deflectors unlike in channels without deflectors where they showed exhaustion.