The protozoan parasite Cryptosporidium parvum is known to occur widely in both source and drinking water and has caused waterborne outbreaks of gastroenteritis. To improve monitoring, the U.S. Environmental Protection Agency developed method 1622 for isolation and detection of Cryptosporidium oocysts in water. Method 1622 is performance based and involves filtration, concentration, immunomagnetic separation, fluorescent-antibody staining and 4,6-diamidino-2-phenylindole (DAPI) counterstaining, and microscopic evaluation. The capsule filter system currently recommended for method 1622 was compared to a hollow-fiber ultrafilter system for primary concentration of C. parvum oocysts in seeded reagent water and untreated surface waters. Samples were otherwise processed according to method 1622. Rates of C. parvum oocyst recovery from seeded 10-liter volumes of reagent water in precision and recovery experiments with filter pairs were 42% (standard deviation [SD], 24%) and 46% (SD, 18%) for hollow-fiber ultrafilters and capsule filters, respectively. Mean oocyst recovery rates in experiments testing both filters on seeded surface water samples were 42% (SD, 27%) and 15% (SD, 12%) for hollow-fiber ultrafilters and capsule filters, respectively. Although C. parvum oocysts were recovered from surface waters by using the approved filter of method 1622, the recovery rates were significantly lower and more variable than those from reagent grade water. In contrast, the disposable hollow-fiber ultrafilter system was compatible with subsequent method 1622 processing steps, and it recovered C. parvum oocysts from seeded surface waters with significantly greater efficiency and reliability than the filter suggested for use in the version of method 1622 tested.Cryptosporidium parvum, a coccidian protozoan parasite, remains a risk to drinking water consumers despite extensive efforts put forth by water providers and the U.S. Environmental Protection Agency (EPA) (7,12,14,15,20,21,22). Oocysts are present in many environmental waters because Cryptosporidium is not only a human pathogen but also a zoonotic pathogen infecting livestock, as well as feral animals, in many watersheds used as sources of drinking water. Oocysts persist in the environment and are resistant to the chlorine disinfection routinely used for drinking water (2,11,13,17,23). Therefore, physical removal by chemical pretreatment and filtration is the primary means for reducing oocysts in source waters. When deficiencies in chemical pretreatment and filtration processes occur, oocysts can breach the treatment system and cause disease outbreaks of the magnitude of the 1993 Milwaukee cryptosporidiosis outbreak (14).Detection of Cryptosporidium oocysts in raw water sources is considered an important component in the management, prevention, and control of Cryptosporidium in drinking water supplies. Methods have been developed to detect C. parvum in both raw source waters and finished drinking waters. The EPA developed an Information Collection Rule requiring large munici...