Structural and mechanistic studies on the crotonase superfamily (CS) are reviewed with the aim of illustrating how a conserved structural platform can enable catalysis of a very wide range of reactions. Many CS reactions have precedent in the 'carbonyl' chemistry of organic synthesis; they include alkene hydration/isomerization, aryl-halide dehalogenation, (de)carboxylation, CoA ester and peptide hydrolysis, fragmentation of beta-diketones and C-C bond formation, cleavage and oxidation. CS enzymes possess a canonical fold formed from repeated betabetaalpha units that assemble into two approximately perpendicular beta-sheets surrounded by alpha-helices. CS enzymes often, although not exclusively, oligomerize as trimers or dimers of trimers. Two conserved backbone NH groups in CS active sites form an oxyanion 'hole' that can stabilize enolate/oxyanion intermediates. The range and efficiency of known CS-catalyzed reactions coupled to their common structural platforms suggest that CS variants may have widespread utility in biocatalysis.
There are four main subfamilies of clinically used bicyclic -lactam antibiotics comprised of the penicillins, the cephalosporins, the carbapenems, and the oxacephems. Three inhibitors of the serine -lactamases have also found extensive clinical use and although these compounds are themselves bicyclic -lactams, they possess limited antibiotic activity; hence are used in conjunction with a penicillin. With
Enzyme in action: Labeling studies and the finding that carboxymethylproline synthase catalyzes production of deuterated (2S,5S)‐6,6′‐dimethyl‐trans‐carboxymethylproline (3) from dimethylmalonyl‐CoA (1) and labeled l‐pyrroline‐5‐carboxylate (2) limit possible mechanisms of CC bond formation and thioester hydrolysis. A key feature in the catalysis is that intermediates are stabilized by hydrogen bonds in the “oxy‐anion hole” of the enzyme (dark curve in scheme).
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