The steric zipper is a common hydrophobic packing structure
of
peptide side chains that forms between two adjacent β-sheet
layers in amyloid and related fibrils. Although previous studies have
revealed that peptide fragments derived from native protein sequences
exhibit steric zipper structures, their de novo designs have rarely
been studied. Herein, steric zipper structures were artificially constructed
in the crystalline state by metal-induced folding and assembly of
tetrapeptide fragments Boc-3pa-X1-3pa-X2-OMe
(3pa: β-(3-pyridyl)-l-alanine; X1 and X2: hydrophobic amino acids). Crystallographic studies revealed
two types of packing structures, interdigitation and hydrophobic contact,
that result in a class 1 steric zipper geometry when the X1 and X2 residues contain alkyl side chains. Furthermore,
a class 3 steric zipper geometry was also observed for the first time
among any reported steric zippers when using tetrapeptide fragments
with (X1, X2) = (Thr, Thr) and (Phe, Leu). The
system could also be extended to a knob–hole-type zipper using
a pentapeptide sequence.
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