The Antarctic and Arctic regions offer a unique opportunity to test factors shaping biogeography of marine microbial communities because these regions are geographically far apart, yet share similar selection pressures. Here, we report a comprehensive comparison of bacterioplankton diversity between polar oceans, using standardized methods for pyrosequencing the V6 region of the small subunit ribosomal (SSU) rRNA gene. Bacterial communities from lower latitude oceans were included, providing a global perspective. A clear difference between Southern and Arctic Ocean surface communities was evident, with 78% of operational taxonomic units (OTUs) unique to the Southern Ocean and 70% unique to the Arctic Ocean. Although polar ocean bacterial communities were more similar to each other than to lower latitude pelagic communities, analyses of depths, seasons, and coastal vs. open waters, the Southern and Arctic Ocean bacterioplankton communities consistently clustered separately from each other. Coastal surface Southern and Arctic Ocean communities were more dissimilar from their respective open ocean communities. In contrast, deep ocean communities differed less between poles and lower latitude deep waters and displayed different diversity patterns compared with the surface. In addition, estimated diversity (Chao1) for surface and deep communities did not correlate significantly with latitude or temperature. Our results suggest differences in environmental conditions at the poles and different selection mechanisms controlling surface and deep ocean community structure and diversity. Surface bacterioplankton may be subjected to more short-term, variable conditions, whereas deep communities appear to be structured by longer water-mass residence time and connectivity through ocean circulation. bipolar | biodiversity | next-generation sequencing | microbial ecology

Recent advances in understanding the ecology of marine systems have been greatly facilitated by the growing availability of metagenomic data, which provide information on the identity, diversity and functional potential of the microbial community in a particular place and time. Here we present a dataset comprising over 5 terabases of metagenomic data from 610 samples spanning diverse regions of the Atlantic and Pacific Oceans. One set of metagenomes, collected on GEOTRACES cruises, captures large geographic transects at multiple depths per station. The second set represents two years of time-series data, collected at roughly monthly intervals from 3 depths at two long-term ocean sampling sites, Station ALOHA and BATS. These metagenomes contain genomic information from a diverse range of bacteria, archaea, eukaryotes and viruses. The data’s utility is strengthened by the availability of extensive physical, chemical, and biological measurements associated with each sample. We expect that these metagenomes will facilitate a wide range of comparative studies that seek to illuminate new aspects of marine microbial ecosystems.

Macronutrients in sinking phytoplankton are typically remineralized at different rates, but less is known about the fate of micronutrient metals associated with sinking cells. Scavenging, the presence of co-occurring abiotic particles, and inadvertent contamination limit the utility of bulk analytical approaches to study remineralization of trace metals in sinking phytoplankton. We used synchrotron x-ray fluorescence mapping to measure macronutrients (P, S, and Si) and trace metals (Fe, Ni, and Zn) in individual cells of the diatom Asterionellopsis glacialis during a spring bloom in subtropical waters off New Zealand. P, S, Zn, and Ni were released significantly faster than Fe and Si from sinking cells in the upper 200 m. Bulk particulate element fluxes to sediment traps indicated similar trends, but biogenic silica flux was attenuated much faster than Si was lost from intact sinking cells collected in the traps. The metals were spatially co-located with P and S in upper ocean cells, but this association with P and S (based on a spatial resolution of 450 nm) was largely absent in sinking cells. In contrast, Fe retained a weak spatial association with Si, suggesting that remineralized Fe may be re-scavenged onto cell surfaces. As a result, dissolved Fe : macronutrient stoichiometries in the water column likely underestimate stoichiometries in sinking cells. We propose linkages between the selective loss of diatom cellular components (e.g., ribosomes or phospholipid membranes, Zn-finger proteins, and urease) and the observed recycling of specific elements (P, Zn, and Ni, respectively), which set the stoichiometry of macro-and micronutrient supply to surface waters.

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Prochlorococcus and Synechococcus are the dominant primary producers in marine ecosystems and perform a significant fraction of ocean carbon fixation. These cyanobacteria interact with a diverse microbial community that coexists with them. Comparative genomics of cultivated isolates has helped address questions regarding patterns of evolution and diversity among microbes, but the fraction that can be cultivated is miniscule compared to the diversity in the wild. To further probe the diversity of these groups and extend the utility of reference sequence databases, we report a data set of single cell genomes for 489 Prochlorococcus, 50 Synechococcus, 9 extracellular virus particles, and 190 additional microorganisms from a diverse range of bacterial, archaeal, and viral groups. Many of these uncultivated single cell genomes are derived from samples obtained on GEOTRACES cruises and at well-studied oceanographic stations, each with extensive suites of physical, chemical, and biological measurements. The genomic data reported here greatly increases the number of available Prochlorococcus genomes and will facilitate studies on evolutionary biology, microbial ecology, and biological oceanography.