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Abstract. This paper documents the picoplankton community's response to changes in oceanographic conditions in the period between October 2011 and September 2012 at two stations belonging to the South Adriatic Pit (SAP). The recorded data include the community's abundance, composition, prokaryotic production rates and bacterial metabolic capacity. The sampling period included an intense sea cooling with formation of exceptional, record-breaking dense water. We documented an especially intense winter convection episode that completely diluted the core of Levantine intermediate waters (LIW) in a large area encompassing the SAP's center and its margin. During this convection event the whole picoplankton community had significantly higher abundances with a recorded picoeukaryotic peak at the SAP margin. In the post-convection phase in March, prokaryotic heterotrophic production strongly increased in the entire SAP area (up to 50 times; 456.8 nM C day−1). An autotrophic biomass increase (up to 5 times; 4.86 μg L−1) and a disruption of a close correspondence between prokaryotic heterotrophic biomass production and cell replication rates were observed only in the center of the SAP, which was not under the influence of LIW. At the SAP's margin such an effect was attenuated by LIW, since the waters affected by LIW were characterized by decreased concentrations of dissolved inorganic nitrogen, decreased autotrophic biomasses, and by increased bacterial biomass production balanced with cell replication rates as well as by the domination of Synechococcus among autotrophic picoplankton. The metabolic capacity was lowest in spring when autotrophic biomass largely increased, while the highest levels found in the pre-convection phase (October 2011) suggest that the system was more oligotrophic before than after the convection event. Furthermore, we showed that metabolic capacity is a trait of bacterial community independent of environmental conditions and tightly linked to cell replication and substrate availability. In contrast, the bacterial community composition appears to be strongly influenced by physico-chemical characteristics of waters (e.g., temperature and nutrients) and environmental forcing (e.g., convection and LIW). Our results showed that the two oceanographic phenomena of the Southern Adriatic, strongly relevant for the total production of the Adriatic Sea, winter convection and LIW intrusion, regulate the changes in picoplankton community structure and activities.

Submarine groundwater discharge (SGD) is a significant source of biogenic elements in estuaries, and relevant studies in karstic estuaries are scarce. Krka River Estuary (KRE), located on the eastern Adriatic Sea (Croatia), is a typical oligotrophic stratified karstic estuary. In this study, based on 226Ra and 228Ra, the total SGD flux into the KRE surface layer was estimated to be (12.8–16.2) × 105 m3/day. A conservative estimation of the fresh groundwater flux was (5.0–8.3) × 105 m3/day, which accounts for 10–17% of the Krka River discharge into the estuary. By establishing water and nutrient budgets in the KRE surface layer, we found that SGD dominated the nutrient sources, although it accounted for a small portion of the total inflow water. Specifically, net SGD‐derived dissolved inorganic nitrogen (DIN) and silicates contributed 58–90% and 24–64%, respectively, to the total input fluxes. These results indicate that SGD was a major external nutrient source, in which net SGD‐derived high DIN flux and high DIN to dissolved inorganic phosphorus ratio may affect productivity in the KRE ecosystem and nearby Adriatic Sea. Additionally, net SGD‐derived dissolved inorganic carbon (DIC) flux in the KRE (1.53 mol · m2 · day) was much higher than those in most estuaries worldwide, suggesting that the DIC‐enriched karst aquifers are important sources for global carbon cycle. Therefore, the impact of net SGD‐derived DIC from karst aquifers on coastal seas will likely become more evident and substantial with further development of global climate change, such as sea level rise.