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Processes underlying the temporal and spatial variations observed in the distribution of jellyfish and non‐gelatinous zooplankton in the Gulf of Oman are not well understood. This information gap is clearly a major issue in controlling the harmful blooms of jellyfish and non‐gelatinous zooplankton. Samples of jellyfish and non‐gelatinous zooplankton were collected from six stations in Chabahar Bay and three stations in Pozm Bay within four seasons. At each station, environmental variables were also recorded from bottom and surface water. A total of 83 individuals of medusae representing four species of Scyphozoa (i.e., Cyanea nozakii, Chrysaora sp., Pelagia noctiluca, Catostylus tagi) and species of Hydrozoa (i.e., Diphyes sp., Rhacostoma sp., Aequorea spp.) were observed in the study area. A total of 70,727.25 individuals/m−3 of non‐gelatinous zooplankton dominated by copepods and cladocerans were collected in nine stations within the four seasons. The results of a RELATE analysis yielded no significant association between species composition for jellyfish and non‐gelatinous zooplankton. Among environmental variables, water transparency, nitrite concentration, water depth and temperature were better associated with the total variation in jellyfish species composition than with that of non‐gelatinous zooplankton. Dissolved oxygen, pH, and phosphate concentration were significant environmental variables associated with the variation in the spatial and temporal distribution patterns of non‐gelatinous zooplankton assemblages. Although some jellyfish species (i.e., Rhacostoma sp., Pelagia noctiluca, Catostylus tagi) occur independently of non‐gelatinous zooplankton assemblages, other jellyfish (i.e., Chrysaora sp., Aequorea spp., Cyanea nozakii, Diphyes sp.) are strongly correlated with non‐gelatinous zooplankton assemblages.

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