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<p>Soil microbial growth, respiration and carbon use efficiency (CUE) are essential parameters to understand, describe and model the soil carbon cycle. While seasonal dynamics of microbial respiration are well studied, little is known about how microbial growth and CUE change over the course of a year, especially outside the plant growing season. In this study we measured soil microbial respiration, growth and biomass in an agricultural field and a deciduous forest 16 times over the course of two years. We sampled plots, at which harvest residues or leaf litter were either incorporated or removed. We observed strong seasonal variations of microbial respiration, growth and biomass. All microbial parameters were significantly higher at the forest site, which contained 3.5% organic C compared to the agricultural site with 0.9% organic C. CUE also varied strongly but was overall significantly higher at the agricultural site ranging from 0.1 to 0.7 compared to the forest site where CUE ranged from 0.1 to 0.6. We found that microbial respiration and to a lesser extent microbial growth followed the seasonal dynamics of soil temperature. Microbial growth was further affected by plant or foliage presence. At low temperatures in winter, both microbial respiration and growth rates were lowest. Due to higher temperature sensitivity of microbial respiration, CUE showed the highest values in the coldest months. Microbial biomass C was also strongly increased in winter. Surprisingly, this winter peak was not connected to high microbial growth or an increase in DNA content. This suggests that microorganisms accumulated osmo- or cryoprotectants but did not divide. This microbial winter bloom and following decline, where C is released and can be stabilized, could constitute the main season for C sequestration in temperate soil systems. &#160;Highly variable CUE, and the fact that CUE is calculated from independently controlled microbial respiration and growth, ask for great caution when CUE is used to describe soil microbial physiology, soil C dynamics or C sequestration. Instead, microbial respiration, microbial growth and biomass should rather be investigated individually to better understand the soil C cycle.</p>
In temperate soil systems, microbial biomass often increases during winter and decreases again in spring. This build-up and release of microbial carbon could potentially lead to a stabilization of soil carbon during winter times. Whether this increase is caused by changes in microbial physiology, in community composition or by changed substrate allocation within microbes or communities is unclear. In a laboratory incubation study, we looked into microbial respiration and growth, as well as microbial glucose uptake and carbon resource partitioning in response to cooling. Soils taken from a temperate forest and an agricultural system in October 2020, were cooled down from field temperature of 11 °C to 1 °C. We determined microbial growth using 18O-incorporation into DNA immediately after cooling and after an acclimation phase of 7 days; in addition, we traced 13C-labelled glucose into microbial biomass, CO2 respired from the soil, and into microbial phospholipid fatty acids (PLFAs). Our results show that the studied soil microbial communities responded immediately to soil cooling. Independent of soil type and acclimation period, total respiration, as well as 18O based growth, and thus cell division were strongly reduced when soils were cooled from 11 °C to 1 °C, while glucose uptake and glucose-derived respiration were unchanged. We found that microbes increased the investment of glucose-derived carbon in unsaturated phospholipid fatty acids at colder temperatures. Since unsaturated fatty acids retain fluidity at lower temperatures compared to saturated fatty acids, this could be interpreted as a precaution to reduced temperatures. Together with the maintained glucose uptake and reduced cell division, our findings show an immediate response of soil microorganisms to soil cooling, potentially to prepare for freeze-thaw events. The discrepancy between C uptake and cell division, further hints at a mechanism that could explain previously observed high microbial biomass carbon in temperate soils in winter.
<p>In temperate soil systems microbial biomass often increases during winter and decreases again in spring. This build up and release of microbial carbon could potentially lead to a build-up of stabilized soil carbon during winter times. The mechanism behind the increase in microbial carbon is not well understood. In this laboratory incubation study, we looked into microbial physiology as well as microbial glucose uptake and partitioning during cooling. Soils from a temperate forest and agricultural system were cooled down from field temperature of 11&#176;C to 1&#176;C. We added <sup>13</sup>C-labelled glucose immediately and after an acclimation phase of 7 days and traced the <sup>13</sup>C into microbial biomass, CO<sub>2</sub> respired from the soil and phospholipid fatty acids. In addition we determined microbial growth using <sup>18</sup>O-incorporation into DNA.</p><p>First results show that while total respiration was strongly reduced when soils were cooled, glucose-derived respiration was as high in soils at 1&#176;C as at 11&#176;C. The same general pattern was found in soils during fast cooling and after an acclimation phase in agricultural and forest soils. We also saw an increased investment of glucose-derived carbon in unsaturated PLFAs. Since unsaturated fatty acids retain fluidity at lower temperatures compared to saturated fatty acids, this could be interpreted as precaution to reduced temperatures and potential freezing.</p><p>Our results show a distinct response of the soil microbial community to cooling. The maintained glucose-derived respiration and incorporation into PLFAs at low temperatures compared to field temperature might indicate a preferential use of labile C forms during cooling. Moreover, the <sup>13</sup>C incorporation into PLFAs may signal the buildup of cooling resistant cell membranes. These findings will be discussed with results from the <sup>13</sup>C label tracing into microbial biomass, extractable organic carbon and total soil carbon as well as data on microbial growth and carbon use efficiency.</p>
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