Alternate partial root–zone drip irrigation (ADI) or fertigation has favorable effect on crop water- and nitrogen- use efficiencies (WUE and NUE). However, the advantage of combined application of ADI and nitrogen fertigation on crop WUE and NUE remains unclear. A pot experiment was conducted to investigate the impact of three irrigation methods (CDI conventional drip irrigation (both halves of pot irrigated), ADI (both halves of pot alternatively irrigated) and FDI fixed partial root–zone drip irrigation (fixed half of pot irrigated)) and five nitrogen treatments (F0 no N supplied, F1-F4 0.2, 0.18, 0.16 and 0.14 g N per kg soil via fertigation) on sweet-waxy maize. Compared with CDI, ADI reduced water consumption by 19.9%, but increased water use efficiency based on dry seed yield (WUEs) by 32.3%, and also enhanced nitrogen apparent recovery fraction (Nrf) and nitrogen agronomic efficiency (NAE). F1-F4 augmented dry mass accumulation, dry seed yield and total nitrogen uptake if compared to F0. Moreover, F2-ADI had higher shoot and total dry masses, WUEs, total nitrogen uptake, Nrf and NAE. Thus ADI increased nitrogen uptake, WUE and NUE of sweet-waxy maize with nitrogen fertigation of 0.18 g N per kg soil in this study.