Artificial molecular clips and tweezers, designed for cofactor and amino acid recognition, are able to inhibit the enzymatic activity of alcohol dehydrogenase (ADH). IC50 values and kinetic investigations point to two different new mechanisms of interference with the NAD(+)-dependent oxidoreductase: While the clip seems to pull the cofactor out of its cleft, the tweezer docks onto lysine residues around the active site. Both modes of action can be reverted to some extent, by appropriate additives. However, while cofactor depletion by clip 1 was in part restored by subsequent NAD(+) addition, the tweezer (2) inhibition requires the competitive action of lysine derivatives. Lineweaver-Burk plots indicate a competitive mechanism for the clip, with respect to both substrate and cofactor, while the tweezer clearly follows a noncompetitive mechanism. Conformational analysis by CD spectroscopy demonstrates significant ADH denaturation in both cases. However, only the latter case (tweezer-lysine) is reversible, in full agreement with the above-detailed enzyme switch experiments. The complexes of ADH with clips or tweezer can be visualized in a nondenaturing gel electrophoresis, where the complexes migrate toward the anode, in contrast to the pure enzyme which approaches the cathode. Supramolecular chemistry has thus been employed as a means to control protein function with the specificity of artificial hosts opening new avenues for this endeavor.
[structure: see text] Molecular clips functionalized by phosphonate or phosphate groups bind thiamine diphosphate (TPP) and S-adenosylmethionine (SAM) with high affinity in water; both sulfur-based cofactors transfer organic groups to biomolecules. For TPP, various analytical tools point toward a simultaneous insertion of both heterocyclic rings into the electron-rich clip cavity. Similarly, SAM is also embedded with its sulfonium moiety inside the receptor cavity. This paves the way for enzyme models and direct interference with enzymatic processes.
Harned cell pH T measurements were performed on 2-amino-2-hydroxymethyl-1,3-propanediol (TRIS) buffered artificial seawater solutions in the salinity range 5-20, at three equimolal buffer concentrations (0.01, 0.025, 0.04 mol·kg-H 2 O −1 ), and in the temperature range 278.15-318.15 K. Measurement uncertainties were assigned to the pH T values of the buffer solutions and ranged from 0.002 to 0.004 over the investigated salinity and temperature ranges. The pH T values were combined with previous results from literature covering salinities from 20 to 40. A model function expressing pH T as a function of salinity, temperature and TRIS/TRIS·H + molality was fitted to the combined data set. The results can be used to reliably calibrate pH instruments traceable to primary standards and over the salinity range 5-40, in particular, covering the low salinity range of brackish water for the first time. At salinities 5-20 and 35, the measured dependence of pH T on the TRIS/TRIS·H + molality enables extrapolation of quantities calibrated against the pH T values, e.g., the dissociation constants of pH indicator dyes, to be extrapolated to zero TRIS molality. Extrapolated quantities then refer to pure synthetic seawater conditions and define a true hydrogen ion concentration scale in seawater media.
In die Zange genommen: Eine synthetische molekulare Klammer bindet Nicotinamidadenindinucleotidphosphat (NADP+) (siehe Bild) und besetzt zudem sowohl die Cofaktor‐ als auch die Substratbindestelle in Glucose‐6‐phosphat(G6P)‐Dehydrogenase. Diese Kombination zweier Inhibitionsmechanismen macht die Klammer hoch effektiv und selektiv für dieses Enzym gegenüber anderen Dehydrogenasen.
scite is a Brooklyn-based organization that helps researchers better discover and understand research articles through Smart Citations–citations that display the context of the citation and describe whether the article provides supporting or contrasting evidence. scite is used by students and researchers from around the world and is funded in part by the National Science Foundation and the National Institute on Drug Abuse of the National Institutes of Health.
customersupport@researchsolutions.com
10624 S. Eastern Ave., Ste. A-614
Henderson, NV 89052, USA
This site is protected by reCAPTCHA and the Google Privacy Policy and Terms of Service apply.
Copyright © 2024 scite LLC. All rights reserved.
Made with 💙 for researchers
Part of the Research Solutions Family.