Suggestions of collapse in small herbivore cycles since the 1980s have raised concerns about the loss of essential ecosystem functions. Whether such phenomena are general and result from extrinsic environmental changes or from intrinsic process stochasticity is currently unknown. Using a large compilation of time series of vole abundances, we demonstrate consistent cycle amplitude dampening associated with a reduction in winter population growth, although regulatory processes responsible for cyclicity have not been lost. The underlying syndrome of change throughout Europe and grass-eating vole species suggests a common climatic driver. Increasing intervals of low-amplitude small herbivore population fluctuations are expected in the future, and these may have cascading impacts on trophic webs across ecosystems.

Aim\ud \ud We studied global variation in beta diversity patterns of lake macrophytes using regional data from across the world. Specifically, we examined (1) how beta diversity of aquatic macrophytes is partitioned between species turnover and nestedness within each study region, and (2) which environmental characteristics structure variation in these beta diversity components.\ud Location\ud \ud Global.\ud Methods\ud \ud We used presence–absence data for aquatic macrophytes from 21 regions distributed around the world. We calculated pairwise-site and multiple-site beta diversity among lakes within each region using Sørensen dissimilarity index and partitioned it into turnover and nestedness coefficients. Beta regression was used to correlate the diversity coefficients with regional environmental characteristics.\ud Results\ud \ud Aquatic macrophytes showed different levels of beta diversity within each of the 21 study regions, with species turnover typically accounting for the majority of beta diversity, especially in high-diversity regions. However, nestedness contributed 30–50% of total variation in macrophyte beta diversity in low-diversity regions. The most important environmental factor explaining the three beta diversity coefficients (total, species turnover and nestedness) was elevation range, followed by relative areal extent of freshwater, latitude and water alkalinity range.\ud Main conclusions\ud \ud Our findings show that global patterns in beta diversity of lake macrophytes are caused by species turnover rather than by nestedness. These patterns in beta diversity were driven by natural environmental heterogeneity, notably variability in elevation range (also related to temperature variation) among regions. In addition, a greater range in alkalinity within a region, likely amplified by human activities, was also correlated with increased macrophyte beta diversity. These findings suggest that efforts to conserve aquatic macrophyte diversity should primarily focus on regions with large numbers of lakes that exhibit broad environmental gradients

Aquatic macrophytes are one of the biological quality elements in the Water Framework Directive (WFD) for which status assessments must be defined. We tested two methods to classify macrophyte species and their response to eutrophication pressure: one based on percentiles of occurrence along a phosphorous gradient and another based on trophic ranking of species using Canonical Correspondence Analyses in the ranking procedure. The methods were tested at Europe-wide, regional and national scale as well as by alkalinity category, using 1,147 lakes from 12 European states. The grouping of species as sensitive, tolerant or indifferent to eutrophication was evaluated for some taxa, such as the sensitive Chara spp. and the large isoetids, by analysing the (nonlinear) response curve along a phosphorous gradient. These thresholds revealed in these response curves can be used to set boundaries among different ecological status classes. In total 48 taxa out of 114 taxa were classified identically regardless of dataset or classification method. These taxa can be considered the most consistent and reliable indicators of sensitivity or tolerance to eutrophication at European scale. Although the general response of well known indicator species seems to hold, there are many species that were evaluated differently according to the database A. Kolada selection and classification methods. This hampers a Europe-wide comparison of classified species lists as used for the status assessment within the WFD implementation process.

Summary1. In northern Scandinavia there are indications of a long-term decline in the abundance of the three dominant vole species, Clethrionomys glareolus , Clethrionomys rufocanus and Microtus agrestis , since the 1970s. One explanation proposes that intensified clear-cutting has created even-aged and homogeneous forest stands with poor overall conditions for survival and reproduction of the voles. 2. We investigated the relationship between forest age and structural habitat factors and its implications for the species richness and abundance of small mammals. In particular, we assessed the population dynamics of C. glareolus , a forest-dwelling species with rather general habitat requirements . 3. Extensive snap-trapping of small mammals was conducted during 1998-2000 on 24 study sites in boreal forests in northern Sweden. Trapping was carried out along transects running from immature forests of six age classes (0 -50 years) into adjacent reference sites (> 100 years). At each trapping station we recorded 14 habitat variables that were reduced to three principal components (PCs). The PCs were related to late successional traits, such as forest age and cover of tree layers (PC1), cover of tall vegetation in the field layer (PC2) and structural heterogeneity in the forest floor (PC3). 4. The species richness of small mammals, as well as the total abundance of C. glareolus , was positively influenced by tall vegetation (PC2) and structural heterogeneity (PC3) but not by late successional traits (PC1). The youngest forests had higher scores for both PC2 and PC3 compared with older forests. 5. The youngest forests also had the highest species richness and total abundance of C. glareolus . This was associated with a generally higher rate of change in numbers of C. glareolus during summer in the youngest forests compared with adjacent reference sites. In contrast, survival during winter was lower in the youngest forests. We found this result to be consistent with a source-sink scenario where young individuals, primarily born in old forest stands in early summer, migrate into younger forests to breed, but where the probabilities for winter survival are poor. 6. Our study demonstrates that both the species richness of small mammals and the population dynamics of C. glareolus are influenced to a great extent by structural habitat factors that are altered by common forest management practices in northern Sweden. In order to conserve species richness of small mammals and to minimize population fluctuations of C. glareolus in northern Scandinavia, we outline forest management practices that will provide heterogeneous environments, such as leaving logging residues on site after forest harvesting.

Background Anaplasma phagocytophilum is currently regarded as a single species. However, molecular studies indicate that it can be subdivided into ecotypes, each with distinct but overlapping transmission cycle. Here, we evaluate the interactions between and within clusters of haplotypes of the bacterium isolated from vertebrates and ticks, using phylogenetic and network-based methods. Methods The presence of A. phagocytophilum DNA was determined in ticks and vertebrate tissue samples. A fragment of the groEl gene was amplified and sequenced from qPCR-positive lysates. Additional groEl sequences from ticks and vertebrate reservoirs were obtained from GenBank and through literature searches, resulting in a dataset consisting of 1623 A. phagocytophilum field isolates. Phylogenetic analyses were used to infer clusters of haplotypes and to assess phylogenetic clustering of A. phagocytophilum in vertebrates or ticks. Network-based methods were used to resolve host-vector interactions and their relative importance in the segregating communities of haplotypes. Results Phylogenetic analyses resulted in 199 haplotypes within eight network-derived clusters, which were allocated to four ecotypes. The interactions of haplotypes between ticks, vertebrates and geographical origin, were visualized and quantified from networks. A high number of haplotypes were recorded in the tick Ixodes ricinus . Communities of A. phagocytophilum recorded from Korea, Japan, Far Eastern Russia, as well as those associated with rodents had no links with the larger set of isolates associated with I. ricinus , suggesting different evolutionary pressures. Rodents appeared to have a range of haplotypes associated with either Ixodes trianguliceps or Ixodes persulcatus and Ixodes pavlovskyi . Haplotypes found in rodents in Russia had low similarities with those recorded in rodents in other regions and shaped separate communities. Conclusions The groEl gene fragment of A. phagocytophilum provides information about spatial segregation and associations of haplotypes to particular vector-host interactions. Further research is needed to understand the circulation of this bacterium in the gap between Europe and Asia before the overview of the speciation features of this bacterium is complete. Environmental traits may also play a role in the evolution of A. phagocytophilum in ecotypes through yet unknown relationships. Electronic supplementary material The online version of this article (10.1186/s13071-019-3583-8) contains supplementary materi...