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Digitisation of fruit trees using LiDAR enables analysis which can be used to better growing practices to improve yield. Sophisticated analysis requires geometric and semantic understanding of the data, including the ability to discern individual trees as well as identifying leafy and structural matter. Extraction of this information should be rapid, as should data capture, so that entire orchards can be processed, but existing methods for classification and segmentation rely on high-quality data or additional data sources like cameras. We present a method for analysis of LiDAR data specifically for individual tree location, segmentation and matter classification, which can operate on low-quality data captured by handheld or mobile LiDAR. Results demonstrate viability both on real data for avocado and mango trees and virtual data with independently controlled sensor noise and tree spacing.

An approach is suggested for automating fish identification and measurement using stereo Baited Remote Underwater Video footage. Simple methods for identifying fish are not sufficient for measurement, since the snout and tail points must be found, and the stereo data should be incorporated to find a true measurement. We present a modular framework that ties together various approaches in order to develop a generalised system for automated fish detection. A method is also suggested for using machine learning to improve identification. Experimental results indicate the suitability of our approach.

There are numerous emerging applications for digitizing trees using terrestrial and aerial laser scanning, particularly in the fields of agriculture and forestry. Interpretation of LiDAR point clouds is increasingly relying on data-driven methods (such as supervised machine learning) that rely on large quantities of hand-labelled data. As this data is potentially expensive to capture, and difficult to clearly visualise and label manually, a means of supplementing real LiDAR scans with simulated data is becoming a necessary step in realising the potential of these methods. We present an open source tool, SimTreeLS (Simulated Tree Laser Scans), for generating point clouds which simulate scanning with user-defined sensor, trajectory, tree shape and layout parameters. Upon simulation, material classification is kept in a pointwise fashion so leaf and woody matter are perfectly known, and unique identifiers separate individual trees, foregoing post-simulation labelling. This allows for an endless supply of procedurally generated data with similar characteristics to real LiDAR captures, which can then be used for development of data processing techniques or training of machine learning algorithms. To validate our method, we compare the characteristics of a simulated scan with a real scan using similar trees and the same sensor and trajectory parameters. Results suggest the simulated data is significantly more similar to real data than a sample-based control. We also demonstrate application of SimTreeLS on contexts beyond the real data available, simulating scans of new tree shapes, new trajectories and new layouts, with results presenting well. SimTreeLS is available as an open source resource built on publicly available libraries.

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