Parental and consensus maps were constructed in an F2 inter-provenance cross of Eucalyptus globulus, using amplified fragment length polymorphism (AFLP) and microsatellite (or simple sequence repeats [SSR]) markers. The female map had 12 linkage groups and 118 markers, comprising 33 SSR and 85 AFLP loci. The male map had 14 linkage groups and 130 markers comprising 36 SSR and 94 AFLP loci. The integrated map featured 10 linkage groups and 165 markers, including 33 SSR and 132 AFLP loci, a small 11th group was identified in the male parent. Moderate segregation distortion was detected, concentrated in gender specific groups. The strongest distortion was detected in the female parent for which causal mechanisms are discussed. The inclusion of SSR markers previously mapped in several different eucalypt species within the subgenus Symphyomyrtus (E. globulus, E. camaldulensis, and predominantly E. grandis and E. urophylla), allowed comparison of linkage groups across species and demonstrated that linkage orders previously reported in E. globulus, E. grandis and E. urophylla were largely conserved.

Legumes (family Fabaceae) are globally important crops due to their nitrogen fixing ability.Papilionoideae, the best-studied subfamily, have undergone a Whole Genome Duplication (WGD) around 59 million years ago. Recent study found varying WGD ages in subfamilies Mimosoideae and Caesalpinioideae and proposed multiple occurrences of WGD across the family based on gene duplication patterns. Despite that, the genome evolution of legume ancestor into modern legumes after the WGD is not well-understood. We aimed to study genome evolution at the subfamily level using gene-based linkage maps for Acacia auriculiformis and A. mangium (Mimosoideae) and we discovered evidence for a WGD event in Acacia. In additional to synonymous substitution rate (Ks) analysis, we used ancestral karyotype prediction to further corroborate this WGD and elucidate underlying mechanisms of karyotype evolution in Fabaceae.Using publicly available transcriptome resources from 25 species across the family Fabaceae and 2 species from order Fabales, we found that the variations in WGD ages highly correlate (R=0.8606, p-value<0.00001) with the divergence age of Vitis vinifera as an outgroup. If the variation of Ks is corrected, the age of WGDs of the family Fabaceae should be the same and therefore, parsimony would favour a single WGD near the base of Fabaceae over multiple independent WGDs across Fabaceae. In addition, we demonstrated that genome comparison of Papilionoideae with other subfamily provide important insights in understanding genome evolution in legumes.