Total polysomal poly(A)+ RNA of Novikoff hepatoma and of 18-hr regenerating rat liver were compared by analysis of their in vitro translational products on two-dimensional isofocusing/sodium dodecyl suffate gels. This technique resolved the translated proteins sufficiently to permit detection of quantitative and some qualitative differences between the two mRNA populations. Excess (5-7); however, it is virtually impossible to detect distinct mRNA species that contribute less than 1% of the total mRNA population. Detection of mRNA species present in small amounts can be achieved when the hybridization of mRNA to solid-phase cDNA, as described by Venetianer and Leder (8), is combined with the analysis of the translational products of the hybridized mRNA. Recent improvements in two-dimensional gel electrophoresis (9, 10) were utilized in these studies to achieve a high resolution of the translated proteins. ,ug of actinomycin D per ml, 1% ethanol, 15 mg of oligo(dT)-cellulose per ml, 25 ,ug of mRNA per ml, and 55 units of reverse transcriptase per ml. After a 5-min incubation on ice, the sample was incubated at 420 for 60 min and agitated in a shaking water bath (70 strokes per min) to suspend the cellulose. [8-3H]dGTP (10 ,Ci/ml) was used to label the cDNA. cDNA synthesis was approximately 45% with respect to input mRNA (14).
MATERIALS AND METHODSHybridization of mRNA to Oligo(dT)Cellulose cDNA.Twenty micrograms of mRNA was hybridized to a 10-fold excess of cDNA (approximately 200 ,ug), covalently linked to 0.3 g of cellulose, at 40°for approximately 50 hr in a total volume of 3 ml containing 50% formamide, 0.6 M NaCl, 0.1% sodium dodecyl sulfate, 10 mM Tris-HCl (pH 7.6), 1 mM EDTA, and 0.5 A260 unit of oligo(A) per ml (14,15). After the unbound mRNA was washed off the cellulose, the bound mRNA was eluted with 50% formamide/0. 1% sodium dodecyl sulfate/10 mM pH 7.6, at 60°(14). To the eluted fraction, 0.5 A2W unit of oligo(A) per ml was added. The mRNA of both fractions was precipitated by addition of 2.5 volumes of 100% ethanol saturated with sodium acetate. Bound and unbound mRNA were then translated in the wheat germ cellfree system (16,17)