The mechanism of UV-induced cleavage of duplex DNA
containing 5-bromodeoxyuridine under anaerobic
conditions was investigated via product analysis and kinetic isotope
effect measurements using gel electrophoresis.
KIEs strongly suggest that strand breaks result from abstraction
of the C2‘ hydrogen atom from the 5‘-adjacent
nucleotide by deoxyuridin-5-yl (1). It is proposed that
under anaerobic conditions the C2‘ radical is subsequently
oxidized by the cation radical of adenine. The resulting
carbocation undergoes 1,2-hydride migrations from C1‘ and
C3‘ competitively, giving rise to cleavage products containing
3‘-phosphate and the novel, labile 3‘-ketone (4).
The
identity of the latter product is supported by electrospray mass
spectrometric analysis of the crude photolysate. The
results also suggest that the formation of alkaline labile lesions
proceed via hydrogen atom abstraction from the C2‘
position by 1.
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