No abstract

Genomics is a Big Data science and is going to get much bigger, very soon, but it is not known whether the needs of genomics will exceed other Big Data domains. Projecting to the year 2025, we compared genomics with three other major generators of Big Data: astronomy, YouTube, and Twitter. Our estimates show that genomics is a “four-headed beast”—it is either on par with or the most demanding of the domains analyzed here in terms of data acquisition, storage, distribution, and analysis. We discuss aspects of new technologies that will need to be developed to rise up and meet the computational challenges that genomics poses for the near future. Now is the time for concerted, community-wide planning for the “genomical” challenges of the next decade.

Here we report the genome sequence of the honeybee Apis mellifera, a key model for social behaviour and essential to global ecology through pollination. Compared with other sequenced insect genomes, the A. mellifera genome has high A+T and CpG contents, lacks major transposon families, evolves more slowly, and is more similar to vertebrates for circadian rhythm, RNA interference and DNA methylation genes, among others. Furthermore, A. mellifera has fewer genes for innate immunity, detoxification enzymes, cuticle-forming proteins and gustatory receptors, more genes for odorant receptors, and novel genes for nectar and pollen utilization, consistent with its ecology and social organization. Compared to Drosophila, genes in early developmental pathways differ in Apis, whereas similarities exist for functions that differ markedly, such as sex determination, brain function and behaviour. Population genetics suggests a novel African origin for the species A. mellifera and insights into whether Africanized bees spread throughout the New World via hybridization or displacement.

In most animals, longevity is achieved at the expense of fertility, but queen honey bees do not show this tradeoff. Queens are both long-lived and fertile, whereas workers, derived from the same genome, are both relatively short-lived and normally sterile. It has been suggested, on the basis of results from workers, that vitellogenin (Vg), best known as a yolk protein synthesized in the abdominal fat body, acts as an antioxidant to promote longevity in queen bees. We explored this hypothesis, as well as related roles of insulin-IGF-1 signaling and juvenile hormone. Vg was expressed in thorax and head fat body cells in an age-dependent manner, with old queens showing much higher expression than workers. In contrast, Vg expression in worker head was much lower. Queens also were more resistant to oxidative stress than workers. These results support the hypothesis that caste-specific differences in Vg expression are involved in queen longevity. Consistent with predictions from Drosophila, old queens had lower head expression of insulin-like peptide and its putative receptors than did old workers. Juvenile hormone affected the expression of Vg and insulin-IGF-1 signaling genes in opposite directions. These results suggest that conserved and species-specific mechanisms interact to regulate queen bee longevity without sacrificing fecundity.Apis mellifera ͉ lifespan ͉ social insect H oney bees (Apis mellifera) provide an attractive model to identify the molecular mechanisms regulating variation in lifespan. Workers and queens develop from the same genome, but queen lifespan is Ϸ10-fold longer (1). Moreover, queen longevity is achieved without the typical tradeoff between longevity and reproduction. Queens lay up to 2,000 eggs per day (2) and live for 1-3 years. Workers, in contrast, have limited fecundity and live for 3-6 weeks during spring and summer in temperate climates (1).Insulin-IGF-1 signaling (IIS) is a key integrative pathway regulating aging, fertility and other important biological processes in vertebrates and invertebrates. Down-regulation of IIS is associated with increased longevity and decreased fertility in Caenorhabditis elegans and Drosophila melanogaster (3). Although IIS functions are widely conserved, it is not known whether naturally occurring differences in longevity also are a result of variation in this pathway.Recent advances in insect molecular endocrinology have revealed connections between IIS and juvenile hormone (JH), a major insect hormone with diverse influences on growth, reproduction, and longevity in many species (4). Studies with Drosophila point to a connection between IIS and JH (5, 6). Because queens are both long-lived and reproductively active, the unique relationship between JH and vitellogenin (Vg) in honey bees has attracted attention (7). Honey bee Vg is a 180-kDa glycolipoprotein (8) synthesized in fat body cells and released to the hemolymph. Vg is best known as a yolk protein and is taken up by developing oocytes (9). JH is a gonadotropin and regulates vitellogenesis in ...