We radio-tagged 577 adult sockeye salmon (Oncorhynchus nerka) returning to the Columbia River in 1997 to determine how migration behaviors were related to migration success in an altered river system. The probability of successful migration declined dramatically for late-entry individuals, concomitant with declines in discharge and the onset of stressful temperatures. Long dam passage times were not related to unsuccessful migration at most dams. However, when migration histories were analyzed across multiple dams or reservoirs, relatively slow migration was significantly associated with unsuccessful migration, suggesting potential cumulative effects. Median passage times at dams were rapid (7.9-33.4 h), although 0.2%-8% of salmon took more than 5 days to pass. Reservoir passage was also rapid, averaging 36.8-61.3 km·day -1 , and appeared to compensate for slowed migration at dams. Rates observed in the unimpounded Hanford Reach suggest that total predam migration rates may have been similar to current rates. Overall, our results suggest that cumulative effects may be more important than negative effects of passage at single dams and that hydrosystem alteration of temperature regimes in the migration corridor may have an important indirect negative impact on adults.Résumé : Nous avons muni d'émetteurs radio 577 saumons rouges (Oncorhynchus nerka) qui retournaient dans le Columbia, afin de déterminer de quelle manière les comportements migrateurs sont reliés au succès de la migration dans un système hydrographique modifié. La probabilité d'une migration réussie diminue de façon spectaculaire chez les individus qui arrivent tard, au moment où le débit diminue et où les températures accablantes s'installent. Dans la plupart des barrages, la durée prolongée de traversée n'est pas reliée à l'insuccès de la migration. Cependant, lorsque le parcours de la migration au travers plusieurs barrages et réservoirs est analysé, il y a une relation significative entre une migration relativement lente et l'insuccès de la migration, ce qui indique la possibilité d'effets cumulatifs. La durée médiane du passage des barrages est courte (7,9-33,4 h), bien que 0,2-8 % des poissons mettent plus de 5 jours à les traverser. La traversée des réservoirs est aussi rapide, à une vitesse moyenne de 36,8-61,3 km·jour -1 , et semble compenser le ralentissement de la migration aux barrages. Les taux observés dans la section Hanford qui ne contient pas de réservoir indiquent que les taux de migration avant l'érection des barrages ont dû être semblables aux taux actuels. En gros, nos résultats indiquent que les effets cumulatifs peuvent être plus importants que les effets négatifs causés par le passage des barrages individuels et que la modification des régimes thermiques du système hydrographique dans le corridor de migration peut avoir un important impact négatif indirect sur les adultes.[Traduit par la Rédaction] Naughton et al. 47

We estimated the consumption of juvenile salmon Oncorhynchus spp. and steelhead O. mykiss by smallmouth bass Micropterus dolomieu in the tailrace and forebay of the Lower Granite Dam and compared this consumption with that in the two major river arms of the upper Lower Granite Reservoir, Snake River, Idaho–Washington. We examined over 9,700 smallmouth bass stomachs from April through August during 1996 and 1997. Juvenile salmonids were not a major component of smallmouth bass diets by weight and number at any location in either 1996 or 1997. Of the approximately 8,600 stomach samples containing food items, only 67 had juvenile salmonid remains. Juvenile salmonids accounted for approximately 11% of smallmouth bass diets by weight in the forebay in 1996 and 5% in the Snake and Clearwater river arms in 1997, with smaller proportions at other locations. Crustaceans and nonsalmonid fishes were the dominant prey items by weight at all locations in 1996 and 1997 except for the Snake River arm in 1996, where macroinvertebrates were dominant. Monthly consumption rates (smolts/bass/d) of juvenile salmonids by smallmouth bass were highest in the forebay (0.02) in April 1996 and in the restricted zone of the forebay (0.05) in July 1997. We estimated that approximately 17,500 (1996: 6,728; 1997: 10,809) juvenile salmonids were consumed by smallmouth bass from April through August in 1996 and 1997. High flows and resulting lower water temperatures and higher turbidity in the Lower Granite Reservoir during our study probably affected salmonid predation rates by smallmouth bass. Management efforts directed at enhancing migratory conditions for juvenile salmonids (e.g., higher flows, lower water temperatures, and higher turbidity) will probably also reduce predation from smallmouth bass.

Spring Chinook Salmon Oncorhynchus tshawytscha are transported above dams in the Willamette River to provide access to blocked spawning habitat. However, 30-95% of these transplants may die before spawning in some years. To varying degrees, salmon in other tributaries-both blocked and unblocked-have similar prespawn mortality (PSM) rates. Our study determined whether holding fish in constant temperature, pathogen-free conditions prior to spawning increased survival through spawning in 2010 through 2012. In addition, we evaluated pathogens as a potential cause of PSM. To monitor survival we captured adult Chinook Salmon early and late in the season from the lower Willamette River and upper tributaries and held them until spawning in 13 C, pathogen-free water. Samples were collected at the time of transport, from moribund or dead fish throughout the summer, and after spawning in the autumn. Prespawn mortalities and postspawned fish from river surveys on holding and spawning reaches above traps were also sampled. Necropsies were performed on all fish, and representative organs were processed for histopathological analysis. Using multiple logistic regression odds ratio analysis, fish that were held were up to 12.6 times less likely to experience PSM than fish that were outplanted to the river. However, Aeromonas salmonicida and Renibacterium salmoninarum were more prevalent in held fish that had PSM than in outplanted fish with PSM, suggesting that fish that were held were more susceptible to these bacteria. Spawned held fish were more likely to have Myxobolus sp. brain infections and less likely to be infected with the kidney myxozoan, Parvicapusla minibicornis, than were spawned outplanted fish. The equal likelihood of other pathogens for held fish and outplanted spawned fish suggests interactive effects determine survival and that holding Chinook Salmon at 13 C prevented expression of lethal pathogenesis. Overall, holding could be a viable method to reduce PSM, but issues of transport stress, proliferative disease, and antibiotics remain.

Thermal layering in reservoirs upstream from hydroelectric dams can create temperature gradients in fishways used by upstream migrating adults. In the Snake River, Washington, federally-protected adult salmonids (Oncorhynchus spp.) often encounter relatively cool water in dam tailraces and lower ladder sections and warmer water in the upstream portions of ladders. Using radiotelemetry, we examined relationships between fish passage behavior and the temperature difference between the top and bottom of ladders (∆T) at four dams over four years. Some spring Chinook salmon (O. tshawytscha) experienced ∆T ≥ 0.5 °C. Many summer and fall Chinook salmon and summer steelhead (O. mykiss) experienced ∆T ≥ 1.0 °C, and some individuals encountered ΔT > 4.0°C. As ΔT increased, migrants were consistently more likely to move down fish ladders and exit into dam tailraces, resulting in upstream passage delays that ranged from hours to days. Fish body temperatures equilibrated to ladder temperatures and often exceeded 20°C, indicating potential negative physiological and fitness effects. Collectively, the results suggest that gradients in fishway water temperatures present a migration obstacle to many anadromous migrants. Unfavorable temperature gradients may be common at reservoir-fed fish passage facilities, especially those with seasonal thermal layering or stratification. Understanding and managing thermal heterogeneity at such sites may be important for ensuring efficient upstream passage and minimizing stress for migratory, temperature-sensitive species.

Previous studies of Pacific salmonid passage over Snake River dams indicated slowed passage at transition pools, the transition area between the fishway entrance and the fish ladder. In 2001 and 2002, we conducted an experiment to determine if modified weirs affected adult salmon and steelhead passage times and route selection through the Lower Granite Dam transition pool. Fish attraction flows through the lower ladder weirs were experimentally increased using removable panels. During the experiment we monitored radio-tagged adult Chinook salmon and steelhead to determine passage routes and times through the transition pool. The weir treatment increased the number of spring-summer Chinook salmon passing straight through the transition pool compared to those exiting the transition pool to the collection channel or tailrace. Mean passage times through the transition pool differed among routes and were significantly lower during treatment periods for the exit-to-collection channel route in springsummer Chinook salmon, but not for other routes. Passage times among routes differed in steelhead, but there was no evidence of treatment effects on route use or passage time. Fall Chinook exhibited similar trends in route use and passage time to springsummer Chinook, but differences were not significant, perhaps because of relatively small sample size. Total dam passage times did not differ by treatment or route for any run. Fish depth during passage of the transition pool suggested that most fish passed through submerged orifices and supported the hypothesis that increased water velocity through these orifices caused the increase in straight-through passage in spring-summer Chinook. Collectively, the results suggested the weir modifications provided improvement to passage through the transition pool for spring-summer Chinook and no evidence of negative effects on other runs. The results from this study were used to develop new design criteria and modifications of the Lower Granite Dam fishway.