In contrast to the classical view of development as a preprogrammed and deterministic process, recent studies have demonstrated that stochastic perturbations of highly non-linear systems may underlie the emergence and stability of biological patterns. Herein, we address the question of whether noise contributes to the generation of the stereotypical temporal pattern in gene expression during flower development. We modeled the regulatory network of organ identity genes in the Arabidopsis thaliana flower as a stochastic system. This network has previously been shown to converge to ten fixed-point attractors, each with gene expression arrays that characterize inflorescence cells and primordial cells of sepals, petals, stamens, and carpels. The network used is binary, and the logical rules that govern its dynamics are grounded in experimental evidence. We introduced different levels of uncertainty in the updating rules of the network. Interestingly, for a level of noise of around 0.5–10%, the system exhibited a sequence of transitions among attractors that mimics the sequence of gene activation configurations observed in real flowers. We also implemented the gene regulatory network as a continuous system using the Glass model of differential equations, that can be considered as a first approximation of kinetic-reaction equations, but which are not necessarily equivalent to the Boolean model. Interestingly, the Glass dynamics recover a temporal sequence of attractors, that is qualitatively similar, although not identical, to that obtained using the Boolean model. Thus, time ordering in the emergence of cell-fate patterns is not an artifact of synchronous updating in the Boolean model. Therefore, our model provides a novel explanation for the emergence and robustness of the ubiquitous temporal pattern of floral organ specification. It also constitutes a new approach to understanding morphogenesis, providing predictions on the population dynamics of cells with different genetic configurations during development.
Aperiodic stochastic resonance in an electrochemical system with excitable dynamics is characterized in experiments and simulations. Two different spike trains, one with stochastic and the other with chaotic interspike intervals, are imposed on the system as subthreshold aperiodic signals. Information transmission is quantified by the cross correlation between the subthreshold input signal and the noise induced system response. A maximum is exhibited in the input-output correlation as a function of the noise amplitude. Numerical simulations with an electrochemical model are in excellent agreement with the experimental observations.
Experimental and numerical evidence of coherence resonance in an electrochemical system is reported. External noise with a Gaussian distribution is superimposed on the system when the anodic current is exhibiting stationary (fixed point) dynamics below a supercritical Hopf bifurcation. The amplitude of the added stochastic perturbations is increased monotonically and the induced oscillatory behavior is analyzed. It is observed, both in experiments and in simulations, that the regularity of the noise induced current oscillations reaches a maximum value for an optimum noise level. This is indicative of coherence resonance and can be explained with a mechanism based on noisy precursors to a Hopf bifurcation.
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