The dynamics of methane concentrations in the atmosphere in recent decades has demonstrated many anomalies which are poorly understood. The only biological way of degrading this potent greenhouse gas is by microbial oxidation. Aerobic methanotrophic bacteria (MB) play an important role in many ecosystems worldwide degrading methane before it can escape to the atmosphere. This group of bacteria has intensively been studied as a model microbial functional guild because there is a strong link between the consumption of methane and the composition of MB communities, facilitating the study of microbial "behavior" in the environment. These studies have revealed a strong biogeography of MB which is displayed in their phylogeny not only on the basis of single functional marker genes but also on

Shallow aquatic systems exchange large amounts of carbon dioxide (CO2) and methane (CH4) with the atmosphere. The production and consumption of both gases is determined by the interplay between abiotic (such as oxygen availability) and biotic (such as community structure and trophic interactions) factors. Fish communities play a key role in driving carbon fluxes in benthic and pelagic habitats. Previous studies indicate that trophic interactions in the water column, as well as in the benthic zone can strongly affect aquatic CO2 and CH4 net emissions. However, the overall effect of fish on both pelagic and benthic processes remains largely unresolved, representing the main focus of our experimental study. We evaluated the effects of benthic and pelagic fish on zooplankton and macroinvertebrates; on CO2 and CH4 diffusion and ebullition, as well as on CH4 production and oxidation, using a full‐factorial aquarium experiment. We compared five treatments: absence of fish (control); permanent presence of benthivorous fish (common carps, benthic) or zooplanktivorous fish (sticklebacks, pelagic); and intermittent presence of carps or sticklebacks. We found trophic and non‐trophic effects of fish on CO2 and CH4 emissions. Intermittent presence of benthivorous fish promoted a short‐term increase in CH4 ebullition, probably due to the physical disturbance of the sediment. As CH4 ebullition was the major contributor to the total greenhouse gas (GHG) emissions, incidental bioturbation by benthivorous fish was a key factor triggering total carbon emissions from our aquariums. Trophic effects impacted GHG dynamics in different ways in the water column and the sediment. Fish predation on zooplankton led to a top‐down trophic cascade effect on methane‐oxidising bacteria. This effect was, however, not strong enough as to substantially alter CH4 diffusion rates. Top‐down trophic effects of zooplanktivorous and benthivorous fish on benthic macroinvertebrates, however, were more pronounced. Continuous fish predation reduced benthic macroinvertebrates biomass decreasing the oxygen penetration depth, which in turn strongly reduced water–atmosphere CO2 fluxes while it increased CH4 emission. Our work shows that fish can strongly impact GHG production and consumption processes as well as emission pathways, through trophic and non‐trophic effects. Furthermore, our findings suggest their impact on benthic organisms is an important factor regulating carbon (CO2 and CH4) emissions.

Among the bacterivorous protists, heterotrophic nanoflagellates (HNFs) are considered to be the main grazers of bacteria in freshwaters due to their size-selective grazing. In this work, we assessed the change of a riverine bacterial community in controlled incubations, where HNFs' predation pressure was initially released through filtration. Filtration did not prevent the passage of cysts, which grew in the enrichments afterwards. Data on the composition of the bacterial community were gathered by Catalyzed Reporter Deposition Fluorescent In situ Hybridization (CARD-FISH) using 16S probes targeting phylogenetic groups. Bacterial cell size was also examined using image analysis. Overall, the initial filtration directly (through release of predation pressure) or indirectly (through competition among bacterial groups) affected the bacterial community composition. When nanoflagellate abundance rose, a reduction of bacterial abundance and changes in cell size distribution were observed. Gamma-Proteobacteria and Actinobacteria were the groups showing the greatest reduction in abundance. Beta-Proteobacteria showed a reduction of cell size and were found in aggregates. AlphaProteobacteria and Actinobacteria developed two distinct filamentous morphotypes: short, segmented rods and long chains of rods. Our results showed that the release of the predation pressure and the successive rise of the nanoflagellates changed the bacterial community in terms of composition at large phylogenetic scale. HNF grazing is highly groupspecific and seems to reconstruct the community based on cell size, and thus, not only drastically changing the bacterial community composition, but also increasing its functional diversity.

In cyanobacteria both photosynthesis and nitrogen fixation can be affected by UV radiation. Two of the most abundant heterocystous cyanobacteria isolates from a temperate ricefield in Uruguay belonging to Anabaena and Calothrix genus were exposed for 1 or 3 hours to UV-B dosis similar to those to which they are exposed in summer. Anabaena survival after 1 h of UV-B exposure was 10% whereas in Calothrix's was 30%. Both the quantum yields of photosybtem II fluorescence and O 2 photoevolution decreased with time of UV-B exposure for Calothrix and only till 1 h for Anabaena. Only the Calothrix strain presented phycoerithryn as antenna pigment and constitutive UV-B screening mycosporine like aminoacids. In the Anabaena strain, nitrogenase activity was drastically reduced with UV-B irradiation but in Calothrix was not affected. Proline content and lipid peroxidation increased after 3 hours of UV-B exposure only in Anabaena sp. The antioxidant enzyme activities evaluated followed different trends for both isolates, with an increase in superoxide dismutase activity in the Calothrix isolate. These results show that the two nitrogen-fixing cyanobacteria studied have different responses to UV-B radiation and that cyanobacteria diversity may be considered when selecting strains to be used as biofertilizers.

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