Global climate change has a significant effect on extreme environments and a profound influence on species survival. However, little is known of the genome-wide pattern of livestock adaptations to extreme environments over a short time frame following domestication. Sheep (Ovis aries) have become well adapted to a diverse range of agroecological zones, including certain extreme environments (e.g., plateaus and deserts), during their post-domestication (approximately 8–9 kya) migration and differentiation. Here, we generated whole-genome sequences from 77 native sheep, with an average effective sequencing depth of ∼5× for 75 samples and ∼42× for 2 samples. Comparative genomic analyses among sheep in contrasting environments, that is, plateau (>4,000 m above sea level) versus lowland (<100 m), high-altitude region (>1500 m) versus low-altitude region (<1300 m), desert (<10 mm average annual precipitation) versus highly humid region (>600 mm), and arid zone (<400 mm) versus humid zone (>400 mm), detected a novel set of candidate genes as well as pathways and GO categories that are putatively associated with hypoxia responses at high altitudes and water reabsorption in arid environments. In addition, candidate genes and GO terms functionally related to energy metabolism and body size variations were identified. This study offers novel insights into rapid genomic adaptations to extreme environments in sheep and other animals, and provides a valuable resource for future research on livestock breeding in response to climate change.

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Major challenges posed by crude-oil-derived transportation fuels are high current and prospective oil prices, insecurity of liquid fuel supplies, and climate change risks from the accumulation of fossil fuel CO2 and other greenhouse gases in the atmosphere. One option for addressing these challenges simultaneously involves producing ultraclean synthetic fuels from coal and lignocellulosic biomass with CO2 capture and storage. Detailed process simulations, lifecycle greenhouse gas emissions analyses, and cost analyses carried out in a comprehensive analytical framework are presented for 16 alternative system configurations that involve gasification-based coproduction of Fischer−Tropsch liquid (FTL) fuels and electricity from coal and/or biomass, with and without capture and storage of byproduct CO2. Systematic comparisons are made to cellulosic ethanol as an alternative low GHG-emitting liquid fuel and to alternative options for decarbonizing stand-alone fossil-fuel power plants. The analysis indicates that FTL fuels are typically less costly to produce when electricity is generated as a major coproduct than when producing mainly liquid fuel. Coproduction systems that utilize a cofeed of biomass and coal and incorporate CO2 capture and storage in the design offer attractive opportunities for decarbonizing liquid fuels and power generation simultaneously. Such coproduction systems considered as power generators can provide decarbonized electricity at lower costs than is feasible with stand-alone fossil-fuel power plant options under a wide range of conditions. At a plausible GHG emissions price under a future U.S. carbon mitigation policy ($50/t CO2eq), such a coproduction system built at a scale suitable for competing as a power generator would be able to provide low-GHG-emitting synthetic fuels at the same estimated unit cost as for coal synfuels characterized by ten times the GHG gas emission rate that are produced in a plant with CO2 capture and storage that does not provide electricity as a major coproduct having three times the synfuel output capacity and requiring twice the total capital investment. Moreover, the low GHG-emitting synfuels produced by such systems would be less costly to produce than cellulosic ethanol and require only half as much lignocellulosic biomass.

Understanding the genetic changes underlying phenotypic variation in sheep (Ovis aries) may facilitate our efforts towards further improvement. Here, we report the deep resequencing of 248 sheep including the wild ancestor (O. orientalis), landraces, and improved breeds. We explored the sheep variome and selection signatures. We detected genomic regions harboring genes associated with distinct morphological and agronomic traits, which may be past and potential future targets of domestication, breeding, and selection. Furthermore, we found non-synonymous mutations in a set of plausible candidate genes and significant differences in their allele frequency distributions across breeds. We identified PDGFD as a likely causal gene for fat deposition in the tails of sheep through transcriptome, RT-PCR, qPCR, and Western blot analyses. Our results provide insights into the demographic history of sheep and a valuable genomic resource for future genetic studies and improved genome-assisted breeding of sheep and other domestic animals.