Multi-heme proteins have attracted much attention recently due to their prominent role in mediating extracellular electron transport (ET), but one of their key fundamental properties, the rate constants for ET between the constituent heme groups, have so far evaded experimental determination. Here we report the set of heme-heme theoretical ET rate constants that define electron flow in the tetra-heme protein STC by combining a novel projector-operator diabatization approach for electronic coupling calculation with molecular dynamics simulation of ET free energies. On the basis of our calculations, we find that the protein limited electron flux through STC in the thermodynamic downhill direction (heme 1→4) is ∼3 × 10 s. We find that cysteine linkages inserting in the space between the two terminal heme pairs 1-2 and 3-4 significantly enhance the overall electron flow, by a factor of about 37, due to weak mixing of the sulfur 3p orbital with the Fe-heme d orbitals. While the packing density model, and to a higher degree, the pathway model of biological ET partly capture the predicted rate enhancements, our study highlights the importance of the atomistic and chemical nature of the tunneling medium at short biological tunneling distances. Cysteine linkages are likely to enhance electron flow also in the larger deca-heme proteins MtrC and MtrF, where heme-heme motifs with sub-optimal edge-to-edge distances are used to shuttle electrons in multiple directions.
ABSTRACT:The interaction of water with metal oxide surfaces plays a crucial role in the catalytic and geochemical behavior of metal oxides. In a vast majority of studies, the interfacial structure is assumed to arise from a relatively static lowest energy configuration of atoms, even at room temperature. Using hematite (-Fe2O3) as a model oxide, we show through a direct comparison of in situ synchrotron X-ray scattering with density functional theorybased molecular dynamics (DFT-MD) simulations that the structure of the (11 ̅ 02) termination is dynamically stabilized by picosecond water exchange. Simulations show frequent exchanges between terminal aquo groups and adsorbed water in locations and with partial residence times consistent with experimentally determined atomic sites and fractional occupancies. Frequent water exchange occurs even for an ultrathin adsorbed water film persisting on the surface under a dry atmosphere. The resulting time-averaged interfacial structure consists of a ridged lateral arrangement of adsorbed water molecules hydrogen bonded to terminal aquo groups. Surface pKa prediction based on bond valence analysis suggests that water exchange will influence the proton transfer reactions underlying the acid/base reactivity at the interface. Our findings provide important new insights for understanding complex interfacial chemical processes at metal oxide-water interfaces.The interfaces between metal oxides and water are among the most important in nature and in emerging energy applications, with wide ranging impacts from photocatalytic water splitting [1][2][3][4] to the geochemical cycling of elements 5,6 . Key chemical processes such as adsorption, electron transfer, growth, and dissolution all depend principally on the atomic structure adopted at these interfaces. For example, dissolution and solute adsorption are regulated by the structure of interfacial water 7,8 . Surface acid/base chemistry 9,10 arises from the types and arrangement of terminal metal-coordinating aquo/hydroxyl groups 3,11-13 .At room temperature an interface is at dynamic equilibrium. In principle, the average interfacial structure depends on the interplay of relatively static atoms at the solid surface with relatively dynamic overlying water molecules. Simulations suggest that movement of overlying water molecules can play an essential role in stabilizing the interface and influencing its chemical behavior 14,15 . However, simulated [14][15][16][17] or spectroscopically probed 18 dynamics are seldom integrated with experimentally derived interface structure models to achieve comprehensive insight into interfacial structure 4 . To understand and predict chemical processes at dynamically active metal oxide-water interfaces, structure and dynamics must be considered as a unified whole.Accurate measurements of interface structure and water ordering rely on interface-sensitive synchrotron X-ray scattering methods 19 . The analysis of multiple crystal truncation rods (CTRs) provides a complete 3-dimensional interface mode...
The interface between transition-metal oxides and aqueous solutions plays an important role in biogeochemistry and photoelectrochemistry, but the atomistic structure is often elusive. Here we report on the surface geometry, solvation structure, and thermal fluctuations of the hydrogen bonding network at the hematite (001)-water interface as obtained from hybrid density functional theory-based molecular dynamics. We find that the protons terminating the surface form binary patterns by either pointing in-plane or out-of-plane. The patterns exist for about 1 ps and spontaneously interconvert in an ultrafast, solvent-driven process within 50 fs. This results in only about half of the terminating protons pointing toward the solvent and being acidic. The lifetimes of all hydrogen bonds formed at the interface are shorter than those in pure liquid water. The solvation structure reported herein forms the basis for a better fundamental understanding of electron transfer coupled to proton transfer reactions at this important interface.
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