DNA origami structures have great potential as functional platforms in various biomedical applications. Many applications, however, are incompatible with the high Mg concentrations commonly believed to be a prerequisite for maintaining DNA origami integrity. Herein, we investigate DNA origami stability in low-Mg buffers. DNA origami stability is found to crucially depend on the availability of residual Mg ions for screening electrostatic repulsion. The presence of EDTA and phosphate ions may thus facilitate DNA origami denaturation by displacing Mg ions from the DNA backbone and reducing the strength of the Mg -DNA interaction, respectively. Most remarkably, these buffer dependencies are affected by DNA origami superstructure. However, by rationally selecting buffer components and considering superstructure-dependent effects, the structural integrity of a given DNA origami nanostructure can be maintained in conventional buffers even at Mg concentrations in the low-micromolar range.
The atomic structure of the polar ZnO(0001) surfaces in a dry and humid oxygen environment is studied combining diffraction experiments and density-functional theory. Our results indicate that for similar stoichiometries a large number of very different, but energetically almost degenerate reconstructions exist. Thus vibrational entropy, which could be safely neglected for most semiconductor surfaces becomes dominant, giving rise to a hitherto not reported strong dependence of surface phase diagrams on temperature. Based on this insight we are able to consistently describe and explain the experimentally observed surface structures on polar ZnO(0001) surfaces.
DNA origami represent powerful platforms for single-molecule investigations of biomolecular processes. The required structural integrity of the DNA origami may, however, pose significant limitations regarding their applicability, for instance in protein folding studies that require strongly denaturing conditions. Here, we therefore report a detailed study on the stability of 2D DNA origami triangles in the presence of the strong chaotropic denaturing agents urea and guanidinium chloride (GdmCl) and its dependence on concentration and temperature. At room temperature, the DNA origami triangles are stable up to at least 24 h in both denaturants at concentrations as high as 6 M. At elevated temperatures, however, structural stability is governed by variations in the melting temperature of the individual staple strands. Therefore, the global melting temperature of the DNA origami does not represent an accurate measure of their structural stability. Although GdmCl has a stronger effect on the global melting temperature, its attack results in less structural damage than observed for urea under equivalent conditions. This enhanced structural stability most likely originates from the ionic nature of GdmCl. By rational design of the arrangement and lengths of the individual staple strands used for the folding of a particular shape, however, the structural stability of DNA origami may be enhanced even further to meet individual experimental requirements. Overall, their high stability renders DNA origami promising platforms for biomolecular studies in the presence of chaotropic agents, including single-molecule protein folding or structural switching.
The adsorption of water monomers, small water clusters, and water thin films on ␣-Al 2 O 3 ͑0001͒ surfaces is studied by density-functional theory. For the metal-terminated surface, the calculations favor the dissociative adsorption for low coverages and the formation of hexagons of alternating dissociatively and molecularly adsorbed water monomers for water-rich conditions. The calculated adsorption energy per water molecule decreases from about 1.5 eV for single adsorbed molecules to about 1.2 eV for thin films in very good agreement with our temperature programmed desorption experiments. The fully hydroxylated ͑gibbsitelike͒ surface, however, represents the thermodynamic ground state of the ␣-Al 2 O 3 ͑0001͒ surface in the presence of water.
scite is a Brooklyn-based organization that helps researchers better discover and understand research articles through Smart Citations–citations that display the context of the citation and describe whether the article provides supporting or contrasting evidence. scite is used by students and researchers from around the world and is funded in part by the National Science Foundation and the National Institute on Drug Abuse of the National Institutes of Health.
customersupport@researchsolutions.com
10624 S. Eastern Ave., Ste. A-614
Henderson, NV 89052, USA
This site is protected by reCAPTCHA and the Google Privacy Policy and Terms of Service apply.
Copyright © 2024 scite LLC. All rights reserved.
Made with 💙 for researchers
Part of the Research Solutions Family.