The COVID‐19 pandemic caused by the SARS‐CoV‐2 has mobilized scientific attention in search of a treatment. The cysteine‐proteases, main protease (Mpro) and papain‐like protease (PLpro) are important targets for antiviral drugs. In this work, we simulate the interactions between the Mpro and PLpro with Ebselen, its metabolites and derivatives with the aim of finding molecules that can potentially inhibit these enzymes. The docking data demonstrate that there are two main interactions between the thiol (−SH) group of Cys (from the protease active sites) and the electrophilic centers of the organoselenium molecules, i. e. the interaction with the carbonyl group (O=C … SH) and the interaction with the Se moiety (Se … SH). Both interactions may lead to an adduct formation and enzyme inhibition. Density Functional Theory (DFT) calculations with Ebselen indicate that the energetics of the thiol nucleophilic attack is more favorable on Se than on the carbonyl group, which is in accordance with experimental data (Jin et al. Nature , 2020, 582 , 289–293). Therefore, organoselenium molecules should be further explored as inhibitors of the SARS‐CoV‐2 proteases. Furthermore, we suggest that some metabolites of Ebselen (e. g. Ebselen diselenide and methylebselenoxide) and derivatives ethaselen and ebsulfur should be tested in vitro as inhibitors of virus replication and its proteases.

A synergistic effect resulting from the interaction of small (2.4-3.1 nm) naked Pt nanoparticles (NPs) imprinted on N-doped carbon supports is evidenced by structural, electronic and electrochemical characterization. The size and distribution of the sputtered Pt NPs are found to be related to the nature of the support because Pt NPs are preferentially located at N sites. In addition, Rutherford backscattering shows that a deeper penetration of the Pt NPs is obtained in the N-doped carbon support with larger pore diameters. The ligand effect of the N-doped carbon supports is found to occur by electron donation from N and N sites to the Pt NPs and the electron acceptor behavior of the C=N sites. The carbon matrix acquires a basic characteristic (electron-richer, metallic behavior) capable of interacting with metallic NPs akin to a bimetallic-like system. The imprinted Pt NPs are active catalysts for oxidation, although displaying poor catalytic activity for reduction reactions. The catalyst N-doped carbon supports play an important role in the overall catalytic process, rather than only acting as a simple active phase carrier.

The papain-like protease (PL pro ) from SARS-CoV-2 is an important target for the development of antivirals against COVID-19. The safe drug disulfiram (DSF) presents antiviral activity inhibiting PL pro in vitro, and it is under clinical trial studies, indicating to be a promising anti-COVID-19 drug. In this work, we aimed to understand the mechanism of PL pro inhibition by DSF and verify if DSF metabolites and derivatives could be potential inhibitors too. Molecular docking, DFT, and ADMET techniques were applied. The carbamoylation of the active site cysteine residue by DSF metabolite (DETC-MeSO) is kinetically and thermodynamically favorable (Δ G ‡ = 3.15 and Δ G =  − 12.10 kcal mol -1 , respectively). Our results strongly suggest that the sulfoxide metabolites from DSF are promising covalent inhibitors of PL pro and should be tested in in vitro and in vivo assays to confirm their antiviral action. Graphical abstract Supplementary Information The online version contains supplementary material available at 10.1007/s00894-022-05341-2.