The complete genomic sequence of a Chinese Potato virus X isolate FX21 (PVX-FX21) was determined from three overlapping cDNA clones. The genome of PVX-FX21 is 6435 nucleotides in length excluding the poly(A) tail and contains five open reading frames (ORFs). Its entire genomic sequence shares 95.2-96.3% identities with Asian and European isolates, and 77.3-77.8% with American isolates. Phylogenetic analysis of the complete genomic sequence reveals two groups: the Eurasian group and the American group. PVX-FX21 belongs to the Eurasian group and forms a separate sub-branch with three Asian isolates. Similar analyses of the coat protein genes of 37 PVX isolates also reveal two major groups. All PVX isolates from Asia are clustered to group I, whereas isolates from Europe and America are clustered to both groups. Nucleotide sequence diversity analyses show that there is no geographical differentiation between PVX isolates and that constraint on the ORF encoding RNA-dependent RNA polymerase is much higher than those on the other four ORFs.

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This study determined the tuf gene sequence of the phytoplasma specific to paulownia witches'-broom from Nanyang, China (hereby designated PaWB-Ny). The PaWB-Ny tuf gene was 1185 nucleotides in length and confirmed that the phytoplasma belongs to subgroup 16SrI-D of aster yellows. Three characteristic GTP-binding protein motifs were identified based on the peptide deduced from the tuf gene sequence. Results suggested that the elongation factor EF-Tu was localized in the cytoplasm and lacked hydrophobic transmembrane domains. Antibodies against PaWB-Ny EF-Tu were prepared by rabbit immunization with glutathione-S-transferase (GST)-tagged EF-Tu fusion protein expressed in Escherichia coli. EF-Tu exhibited a molecular weight of 43 kDa and was detected in PaWB-infected paulownia plants by western blot analysis. Indirect enzyme-linked immunosorbent assays (ELISA) and dot blotting analyses were performed with freezing and thawing treatments during antigen preparation. Dilution of extracts to an appropriate scale significantly reduced non-specific reactions. The resultant PaWB EF-Tu antibody reacted with antigens from plants infected with periwinkle virescence and chinaberry tree witches'-broom phytoplasmas, but not those infected with jujube witches'-broom or bishopwood witches'-broom phytoplasma. The EF-Tu was characteristically localized within the phytoplasmal cytoplasm of infected plant phloem tissues.