Species are the currency of biology and important units of biodiversity, thus errors in species delimitations potentially have important consequences. During the last decades, owing to the use of genetic markers, many nominal species appeared to consist of several reproductively isolated entities called cryptic species (hereafter CS). In this chapter we explain why CS are important for practical reasons related to community and ecosystem monitoring, and for biological knowledge, particularly for understanding ecological and evolutionary processes. To find solutions to practical problems and to correct biological errors, a thorough analysis of the distinct types of CS reported in the literature is necessary and some general rules have to be identified. Here we explain how to identify CS, and we propose a rational and practical classification of CS (and putative CS), based on the crossing of distinct levels of genetic isolation with distinct levels of morphological differentiation. We also explain how to identify likely explanations for a given CS (either inherent to taxonomic processes or related to taxon biology, ecology and geography) and how to build a comprehensive database aimed at answering these practical and theoretical questions. Our pilot review of the literature in marine animals established that half of the reported cases are not CS sensu stricto (i.e. where morphology cannot distinguish the entities) and just need taxonomic revision. It also revealed significant associations between CS features, such as a higher proportion of diagnostic morphological differences in sympatric than in allopatric CS and more frequent ecologi

Salt pollution of freshwater ecosystems represents a major threat to biodiversity, and particularly to interactions between free‐living species and their associated parasites. Acanthocephalan parasites are able to alter their intermediate host's phenotype to reach final hosts, but this process could be affected by salt pollution, thereby compromising survival of the parasite. We experimentally assessed the impact of salt on the extended phenotype of the parasite Pomphorhynchus laevis in their intermediate host, the amphipod Gammarus pulex, based on three amphipod behaviours: distance covered in flowing water, phototaxis, and geotaxis. We hypothesised that: (1) salt pollution negatively affected the behaviour of uninfected gammarids, and (2) that P. laevis could maintain their capacity to manipulate their host despite this pollution. All three amphipod behaviours were altered by P. laevis: infected G. pulex covered a greater distance, were less photophobic and were more attracted to the water surface than uninfected amphipods, in control or salt‐polluted water. However, salinity reduced distance covered in flowing water and increased attraction to the water surface of uninfected and infected G. pulex. For the phototaxis behaviour, P. laevis enhanced this capacity of manipulation in salt‐polluted water compared to control water. Pomphorhynchus laevis can still manipulate the behaviour of their intermediate host in salt‐polluted water. Acanthocephalan parasites have not been known to be able to manipulate their intermediate host when under pollution stress. Trophic interactions, but not the chances of parasite transmission to their definitive host, appear to be affected by salt pollution. Our study indicates that behavioural modifications induced by complex lifecycle parasites should be more considered in the context of growing concentrations of chemical pollutants in some freshwater ecosystems. Interspecific interactions, and particularly host–parasite relationships, are a key component of ecosystem stability and their alteration could result in major changes in energy flow.

Numerous freshwater acanthocephalans are able to alter the behaviour of their intermediate hosts to increase their predation risk by final hosts, thereby enhancing trophic transmission between their two hosts. Because temperature is widely expected to impact freshwater host-parasite interactions, we investigated how it can affect movements of both uninfected and Pomphorhynchus laevis-infected Gammarus pulex in an artificial stream in 5 cm/s water flow. We found that P. laevis infection of G. pulex induced both higher frequency and higher amplitude of movements along the artificial stream. Moreover, at warmer temperature (21°C), uninfected and P. laevis-infected G. pulex moved more in the artificial stream than at 15°C. In this regard, warmer temperature could then impact gammarids distribution and increase P. laevis transmission rate toward their definitive host in freshwater ecosystems. Firstly, this study provides new insights into how the key temperature factor influences gammarids species movements in the stream. Secondly, elevated temperature did not influence the intensity of P. laevis manipulation in G. pulex intermediate host. This work highlights that warmer temperature might affect the distribution and the behaviour of infected or uninfected freshwater gammarids with no direct effect on acanthocephalan trophic transmission through manipulation.