Objectives Studies suggest that rheumatoid arthritis (RA)-related autoimmunity is initiated at a mucosal site. However, the factors associated with the mucosal generation of this autoimmunity are unknown, especially in individuals who are at-risk for future RA. Therefore, we tested anti-cyclic citrullinated peptide (anti-CCP) antibodies in the sputum of RA-free first-degree relatives (FDRs) of RA patients and patients with classifiable RA. Methods We evaluated induced sputum and serum from 67 FDRs and 20 RA subjects for anti-CCP-IgA and anti-CCP-IgG, with cut-off levels for positivity determined in a control population. Sputum was also evaluated for cell counts, neutrophil extracellular traps (NETs) using sandwich ELISAs for protein/nucleic acid complexes, and total citrulline. Results Sputum anti-CCP-IgA and/or anti-CCP-IgG was positive in 17/67 (25%) FDRs and 14/20 (70%) RA subjects, including a portion of FDRs who were serum anti-CCP negative. In FDRs, elevations of sputum anti-CCP-IgA and anti-CCP-IgG were associated with elevated sputum cell counts and levels of NET complexes. Anti-CCP-IgA was associated with ever-smoking and elevated sputum citrulline levels. Conclusions Anti-CCP is elevated in the sputum of FDRs, including seronegative FDRs, suggesting the lung may be one site of anti-CCP generation in this population. The association of anti-CCP with elevated cell counts and NET levels in FDRs supports a hypothesis that local airway inflammation and NET formation may drive anti-CCP production in the lung and may promote the early stages of RA development. Longitudinal studies are needed to follow the evolution of these processes relative to the development of systemic autoimmunity and articular RA.

The potential functions have been investigated of two proteins in Deinococcus radiodurans R1 predicted to be involved in the maintenance and integrity of the S layer: the hexagonally packed intermediate (Hpi) protein, and SlpA (DR2577), a homologue of an S-layer SlpA protein in Thermus thermophilus. Deletion of the hpi gene had little effect on the structure of the cell envelope or on shear- or solvent-induced stress responses. However, deletion of the slpA gene caused substantial alterations in cell envelope structure, and a significant defect in resistance to solvent and shear stresses compared to the wild-type. Ultrastructural analysis of slpA mutant cells indicated loss of much of the outer Hpi protein carbohydrate coat, the ‘pink envelope’, and the membrane-like backing layer. Together these results suggest that the SlpA protein may be involved in attachment of the Hpi surface layer to the inner cell envelope, and that SlpA may play an important role in the maintenance of cell envelope integrity in D. radiodurans.

Deinococcus radiodurans is a highly radiation-resistant bacterium that is classed in a major subbranch of the bacterial domain. Since very little is known about gene expression in this bacterium, an initial study of promoters was undertaken. In order to isolate promoters and study promoter function, a series of integrative vectors for stable chromosomal insertion in D. radiodurans were developed. These vectors are based on Escherichia coli replicons that are unable to replicate autonomously in D. radiodurans and carry homologous sequences for replacement recombination in the D. radiodurans chromosome. The resulting integration vectors were used to study expression of reporter genes fused to a number of putative promoters that were amplified from the D. radiodurans R1 genome. Further analysis of these and other putative promoters was performed by Northern hybridization and primer extension experiments. In contrast to previous reports, the ؊10 and ؊35 regions of these promoters resembled the 70 consensus sequence of E. coli.Its extraordinary tolerance to extremely high doses of ionizing radiation has made Deinococcus radiodurans the focus of growing scientific interest. This non-spore-forming bacterium is able to survive up to 4,000 times the lethal radiation dose for humans without mutation or loss of viability (2, 9). D. radiodurans is also of interest as a representative of a deeply branching family within the domain Bacteria (10). The sequence of the D. radiodurans R1 genome was recently published and shown to consist of two chromosomes, a megaplasmid, and one plasmid (17).Despite the interest in D. radiodurans, little is known concerning basic gene expression and promoters. Earlier studies showed that Deinococcus promoter regions are poorly recognized in Escherichia coli, and E. coli promoters that were tested were not recognized in D. radiodurans (7,14), suggesting that deinococcal promoters might be different from the classical E. coli 70 type. However, no transcriptional analysis of deinococcal promoters has been carried out. Analysis of the recently published genome sequence revealed only three putative sigma factors, one classing with vegetative 70 (rpoD) sequences, and two classing with extracytoplasmic alternative transcription factors (annotated as rpoE and DR0804 [17]). Surprisingly, orthologs of the nitrogen-starvation, general starvation, and heat shock sigma factors (rpoN, rpoS, and rpoH, respectively) were not found.One reason for the lack of information on promoters in deinococci is the lack of convenient genetic tools for studying promoters. A promoter cloning vector has been described (7), but it involves an antibiotic resistance reporter and is a large plasmid with limited cloning sites. Therefore, we developed a suite of integrative promoter-screening vectors that allow the screening and assessment of promoter regions in D. radiodurans based on lacZ and xylE as reporters. These vectors were used to isolate and analyze promoter regions, and promoter regions were further defined by transcripti...

A morpholinepropanesulfonic acid (MOPS)-buffered rich defined medium (RDM) was optimized to support a reproducible 2.6-h doubling time at 35 degrees C for Deinococcus radiodurans R1 and used to gain insight into vitamin and carbon metabolism. D. radiodurans was shown to require biotin and niacin for growth in this medium. A glutamine-serine simple defined medium (SDM) was developed that supported a 4-h doubling time, and this medium was used to probe sulfur and methionine metabolism. Vitamin B(12) was shown to alleviate methionine auxotrophy, and under these conditions, sulfate was used as the sole sulfur source. Phenotypic characterization of a methionine synthase deletion mutant demonstrated that the B(12) alleviation of methionine auxotrophy was due to the necessity of the B(12)-dependent methionine synthase in methionine biosynthesis. Growth on ammonium as the sole nitrogen source in the presence of vitamin B(12) was demonstrated, but it was not possible to achieve reproducibly good growth in the absence of at least one amino acid as a nitrogen source. Growth on sulfate, cysteine, and methionine as sulfur sources demonstrated the function of a complete sulfur recycling pathway in this strain. These studies have demonstrated that rapid growth of D. radiodurans R1 can be achieved in a MOPS-based medium solely containing a carbon source, salts, four vitamins, and two amino acids.

There are five peptidylarginine deiminase (PAD) isozymes designated PADs 1, 2, 3, 4 and 6, and many are expressed in female reproductive tissues. These enzymes post-translationally convert positively charged arginine amino acids into neutral citrulline residues. Targets for PAD catalyzed citrullination include arginine residues on histone tails which results in chromatin decondensation and changes in gene expression. Some of the first studies examining PADs found that they are localized to rodent uterine epithelial cells. Despite these findings, the function of PAD catalyzed citrullination in uterine epithelial cells is still unknown. To address this, we first examined PAD expression in uterine cross sections from pregnant ewes on gestation day 25 (d25). Immunohistochemistry revealed that the levels of PADs 2 and 4 are robust in luminal and glandular epithelia compared to PADs 1 and 3. Since PADs 2 and 4 have well characterized roles in histone citrullination, we next hypothesized that PADs citrullinate histones in these uterine cells. Examination of caruncle lysates from pregnant ewes on gestation d25 and an ovine luminal epithelial (OLE) cell line shows that histone H3 arginine residues 2, 8, 17 and 26 are citrullinated, but histone H4 arginine 3 is not. Using a pan-PAD inhibitor, we next attenuated histone citrullination in OLE cells which resulted in a significant decrease in the expression of insulin like growth factor binding protein 1 (IGFBP1) mRNA. Since IGFBP1 is important for migration and attachment of the trophectoderm to uterine endometrium, our results suggest that PAD catalyzed citrullination may be an important post-translational mechanism for establishment of pregnancy in ewes.