Summary This study provides an example in the emerging field of biocodicology showing how metagenomics can help answer relevant questions that may contribute to a better understanding of the history of ancient manuscripts. To this end, two Slavonic codices dating from the 11th century were investigated through shotgun metagenomics. Endogenous DNA enabled to infer the animal origin of the skins used in the manufacture of the two codices, while nucleic sequences recovered from viruses were investigated for the first time in this material, opening up new possibilities in the field of biocodicology. In addition, the microbiomes colonizing the surface of the parchments served to determine their conservation status and their latent risk of deterioration. The saline environment provided by the parchments selected halophilic and halotolerant microorganisms, which are known to be responsible for the biodegradation of parchment. Species of Nocardiopsis, Gracilibacillus and Saccharopolyspora, but also members of the Aspergillaceae family were detected in this study, all possessing enzymatic capabilities for the biodeterioration of this material. Finally, a relative abundance of microorganisms originating from the human skin microbiome were identified, most probably related to the intensive manipulation of the manuscripts throughout the centuries, which should be taken with caution as they can be potential pathogens.

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This article reviews the complementary strategies that are used to decipher the valuable information that is contained in ancient parchment documentary materials. A new trend is molecular analysis, which has given rise to the emerging field of biocodicology, comprising protein and DNA analysis for the identification of the biological origin of the skins that are used for their manufacture. In addition, DNA analysis can identify the microbiome that is present in the object under investigation, which adds value by providing information on its history and state of preservation. In any case, it is important to complement the biomolecular investigations with microscopical and physicochemical analyses. Some of the complementary analytical techniques that are reviewed here, such as elemental analysis by X-ray fluorescence (XRF) with compound-specific analytical methods such as Fourier transform infrared (FTIR) and Raman spectroscopy are advantageous as they can be applied in a non-invasive way and without inducing any changes in the objects.

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This paper deals with the enhancement of the readability in historic texts written on parchment. Due to mold, air humidity, water, etc. parchment and text are partially damaged and consequently hard to read. In order to enhance the readability of the text, the manuscript pages are imaged in different spectral bands ranging from 360 to 1000nm. The readability enhancement is based on a spectral and spatial analysis of the multivariate image data by Multivariate Spatial Correlation. The main advantage of the method is that especially the text regions are enhanced which is provided by generating a mask image. This mask is based on the automatic reconstruction of the ruling scheme of the text pages. The method is tested on two medieval Slavonic manuscripts written on parchment.