Anaerobic soil disinfestation (ASD) is an organic amendment-based management tool for controlling soil-borne plant diseases and is increasingly used in a variety of crops. ASD results in a marked decrease in soil redox potential and other physicochemical changes, and a turnover in the composition of the soil microbiome. Mechanisms of ASD-mediated pathogen control are not fully understood, but appear to depend on the carbon source used to initiate the process and involve a combination of biological (i.e., release of volatile organic compounds) and abiotic (i.e., lowered pH, release of metal ions) factors. In this study, we examined how the soil microbiome changes over time in response to ASD initiated with rice bran, tomato pomace, or red grape pomace as amendments using growth chamber mesocosms that replicate ASD-induced field soil redox conditions. Within 2 days, the soil microbiome rapidly shifted from a diverse assemblage of taxa to being dominated by members of the Firmicutes for all ASD treatments, whereas control mesocosms maintained diverse and more evenly distributed communities. Rice bran and tomato pomace amendments resulted in microbial communities with similar compositions and trajectories that were different from red grape pomace communities. Quantitative PCR showed nitrogenase gene abundances were higher in ASD communities and tended to increase over time, suggesting the potential for altering soil nitrogen availability. These results highlight the need for temporal and functional studies to understand how pathogen suppressive microbial communities assemble and function in ASDtreated soils.

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Many walnut orchards were inundated by flooding from the Feather and Stanislaus Rivers in winter and spring 2017 and developed bleeding cankers in trunk, root, and crown tissues exposed to the water. Orchard surveys and diagnostic isolations associated Phytophthora pini, P. chlamydospora, and P. gonapodyides with the cankers in 2017. Pathogenicity of P. pini was confirmed in seedlings and excised shoots of Juglans regia, but the other species caused negligible amounts of disease. Feather River and associated flood waters were assayed using culture-independent sequencing of rRNA gene amplicons and pear baiting methods; 14 species of Phytophthora were detected, including P. chlamydospora and P. gonapodyides, but not P. pini. Severe and prolonged walnut orchard flooding from rivers, such as occurred in 2017, places diverse mixtures of Phytophthora species from multiple sources into close, infective proximity with susceptible walnut tree scions. Systemic chemical or genetic protection strategies may be valuable for orchards subject to such flooding.