No abstract

Existing methods for fiber tracking, interactive bundling and editing from Diffusion Magnetic Resonance Images (DMRI) reconstruct white matter fascicles using groups of virtual pathways. Classical numerical fibers suffer from image noise and cumulative tracking errors. 3D visualization of bundles of fibers reveals structural connectivity of the brain; however, extensive human intervention, tracking variations and errors in fiber sampling make quantitative fascicle comparison difficult. To simplify the process and offer standardized white matter samples for analysis, we propose a new integrated fascicle parcellation and normalization method that combines a generic parametrized volumetric tract model with orientation information from diffusion images. The new technique offers a tract-derived spatial parameter for each voxel within the model. Cross-subject statistics of tract data can be compared easily based on these parameters. Our implementation demonstrated interactive speed and is available to the public in a packaged application.

In this paper, we describe methods for constructing shape priors using orientation information to model white matter tracts from magnetic resonance diffusion tensor images (DTI). Shape Normalization is needed for the construction of a shape prior using statistical methods. Moving beyond shape normalization using boundary-only or orientation-only information, our method combines the idea of sweeping and inverse-skeletonization to parameterize 3D volumetric shape, which provides point correspondence and orientations over the whole volume in a continuous fashion. Tangents from this continuous model can be treated as a de-noised reconstruction of the original structural orientation inside a shape. We demonstrate the accuracy of this technique by reconstructing synthetic data and the 3D cingulum tract from brain DTI data and manually drawn 2D contours for each tract. Our output can also serve as the input for subsequent boundary finding or shape analysis.

No abstract

Fiber tracking in Diffusion Tensor Magnetic Resonance Images (DTI) reveals 3D structural connectivity of the brain conveniently and thus is a viable tool for investigating neural differences. Unfortunately, local noise, image artifacts and numerical tracking errors during integration-based techniques are cumulative. Prematurely terminated fibers and under-sampled fiber bundles result in incomplete reconstruction of white matter fiber tracts and hence incorrect anatomical measurements. Quantitative cross-subject tract analysis, which is critical for abnormality detection, is complicated by inefficient and inaccurate tract reconstruction and normalization from fiber bundles. Because of the above problems, we propose a parcellation method that aims for lower sensitivity to initialization and local orientation error by directly segmenting full white matter tracts (Fasciculography), rather than reconstructing individual curves, from diffusion tensor fields. A fast, robust volumetric and intrinsically normalized solution is achieved by noise-filtering using a generic parametrized tract model to prevent premature tract termination. At the same time, orientation information reduces the search space, significantly speeding up the tract parcellation process with less human intervention. Detailed comparisons against streamline tracking, shortest-path tracking and non-rigid registration using synthetic and real DTIs confirmed the superior properties of Fasciculography. Since a normalized tract can be delineated interactively in a just few seconds using the proposed method, accurate high volume tract comparisons become feasible.