DNA methylation is an important epigenetic modification for genomic regulation in higher organisms that plays a crucial role in the initiation and progression of diseases. The integration and mining of DNA methylation data by methylation-specific PCR and genome-wide profiling technology could greatly assist the discovery of novel candidate disease biomarkers. However, this is difficult without a comprehensive DNA methylation repository of human diseases. Therefore, we have developed DiseaseMeth, a human disease methylation database (http://bioinfo.hrbmu.edu.cn/diseasemeth). Its focus is the efficient storage and statistical analysis of DNA methylation data sets from various diseases. Experimental information from over 14 000 entries and 175 high-throughput data sets from a wide number of sources have been collected and incorporated into DiseaseMeth. The latest release incorporates the gene-centric methylation data of 72 human diseases from a variety of technologies and platforms. To facilitate data extraction, DiseaseMeth supports multiple search options such as gene ID and disease name. DiseaseMeth provides integrated gene methylation data based on cross-data set analysis for disease and normal samples. These can be used for in-depth identification of differentially methylated genes and the investigation of gene–disease relationship.
This paper introduces the Flexible Global Ocean‐Atmosphere‐Land System Model: Grid‐Point Version 3 (FGOALS‐g3) and evaluates its basic performance based on some of its participation in the sixth phase of the Coupled Model Intercomparison Project (CMIP6) experiments. Our results show that many significant improvements have been achieved by FGOALS‐g3 in terms of climatological mean states, variabilities, and long‐term trends. For example, FGOALS‐g3 has a small (−0.015°C/100 yr) climate drift in 700‐yr preindustrial control (piControl) runs and smaller biases in climatological mean variables, such as the land/sea surface temperatures (SSTs) and seasonal soil moisture cycle, compared with its previous version FGOALS‐g2 during the historical period. The characteristics of climate variabilities, for example, Madden‐Julian oscillation (MJO) eastward/westward propagation ratios, spatial patterns of interannual variability of tropical SST anomalies, and relationship between the East Asian Summer Monsoon and El Niño–Southern Oscillation (ENSO), are well captured by FGOALS‐g3. In particular, the cooling trend of globally averaged surface temperature during 1940–1970, which is a challenge for most CMIP3 and CMIP5 models, is well reproduced by FGOALS‐g3 in historical runs. In addition to the external forcing factors recommended by CMIP6, anthropogenic groundwater forcing from 1965 to 2014 was incorporated into the FGOALS‐g3 historical runs.
Both cuticle and membrane lipids play essential roles in quality maintenance and disease resistance in fresh fruits. Many reports have indicated the modification of alternative branch pathways in epicuticular wax mutants; however, the specific alterations concerning lipids have not been clarified thus far. Here, we conducted a comprehensive, timeresolved lipidomic, and transcriptomic analysis on the "Newhall" navel orange (WT) and its glossy mutant (MT) "Gannan No. 1". The results revealed severely suppressed wax formation accompanied by significantly elevated production of 36-carbon plastid lipids with increasing fruit maturation in MT. Transcriptomics analysis further identified a series of key functional enzymes and transcription factors putatively involved in the biosynthesis pathways of wax and membrane lipids. Moreover, the high accumulation of jasmonic acid (JA) in MT was possibly due to the need to maintain plastid lipid homeostasis, as the expression levels of two significantly upregulated lipases (CsDAD1 and CsDALL2) were positively correlated with plastid lipids and characterized to hydrolyze plastid lipids to increase the JA content. Our results will provide new insights into the molecular mechanisms underlying the natural variation of plant lipids to lay a foundation for the quality improvement of citrus fruit.
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