The development of ligands for biological targets is
critically dependent
on the identification of sites on proteins that bind molecules with
high affinity. A set of compounds, called FragLites, can identify
such sites, along with the interactions required to gain affinity,
by X-ray crystallography. We demonstrate the utility of FragLites
in mapping the binding sites of bromodomain proteins BRD4 and ATAD2
and demonstrate that FragLite mapping is comparable to a full fragment
screen in identifying ligand binding sites and key interactions. We
extend the FragLite set with analogous compounds derived from amino
acids (termed PepLites) that mimic the interactions of peptides. The
output of the FragLite maps is shown to enable the development of
ligands with leadlike potency. This work establishes the use of FragLite
and PepLite screening at an early stage in ligand discovery allowing
the rapid assessment of tractability of protein targets and informing
downstream hit-finding.
scite is a Brooklyn-based organization that helps researchers better discover and understand research articles through Smart Citations–citations that display the context of the citation and describe whether the article provides supporting or contrasting evidence. scite is used by students and researchers from around the world and is funded in part by the National Science Foundation and the National Institute on Drug Abuse of the National Institutes of Health.