Computational fluid dynamics simulations of a flow reactor provided 3D spatial distributions of its temperature and flow profiles and abundances of sulfuric acid, nitrogeneous base, and the acid-base clusters formed from them. Clusters were simulated via their kinetic formation and decomposition involving sulfuric acid and base molecules. Temperature and flow profiles and the base and sulfuric acid distributions are characterized and the latter is compared to mass spectrometer measurements. Concentrations of simulated clusters of sulfuric acid with either NH or dimethylamine were compared to experimentally measured particle concentrations. Cluster thermodynamics were adjusted to better the agreement between simulated and experimental results. Free energies of acid-base clusters derived here are also compared to recent quantum chemistry calculations. Sensitivities to the thermodynamics were explored with a 2D laminar flow simulation and the abundance of large clusters was most sensitive to the thermodynamics of the smallest cluster, consisting of 1 base and 1 acid. Comparisons of this model to the computational fluid dynamics models provide verification of the implemented cluster chemistry. A box model was used to calculate nucleation rates for the conditions of other experimental work, and to provide predictions of nucleation for typical atmospheric conditions.
We present Ogre, an open-source code for generating surface slab models from bulk molecular crystal structures. Ogre is written in Python and interfaces with the FHI-aims code to calculate surface energies at the level of density functional theory (DFT). The input of Ogre is the geometry of the bulk molecular crystal. The surface is cleaved from the bulk structure with the molecules on the surface kept intact. A slab model is constructed according to the user specifications for the number of molecular layers and the length of the vacuum region. Ogre automatically identifies all symmetrically unique surfaces for the user-specified Miller indices and detects all possible surface terminations. Ogre includes utilities to analyze the surface energy convergence and Wulff shape of the molecular crystal. We present the application of Ogre to three representative molecular crystals: the pharmaceutical aspirin, the organic semiconductor tetracene, and the energetic material HMX. The equilibrium crystal shapes predicted by Ogre are in agreement with experimentally grown crystals, demonstrating that DFT produces satisfactory predictions of the crystal habit for diverse classes of molecular crystals.
A crystal structure prediction (CSP) workflow, based on the random structure generator, Genarris, and the genetic algorithm (GA), GAtor, is applied to the energetic materials 2,4,6-trinitrobenzene-1,3,5-triamine (TATB) and 2,4,6-trinitrobenzene-1,3-diamine (DATB),...
Molecular crystals of energetic materials
(EMs) are denser than
typical molecular crystals and are characterized by distinct intermolecular
interactions between nitrogen-containing moieties. To assess the performance
of dispersion-inclusive density functional theory (DFT) methods, we
have compiled a data set of experimental sublimation enthalpies of
31 energetic materials. We evaluate the performance of three methods:
the semilocal Perdew–Burke–Ernzerhof (PBE) functional
coupled with the pairwise Tkatchenko-Scheffler (TS) dispersion correction,
PBE with the many-body dispersion (MBD) method, and the PBE-based
hybrid functional (PBE0) with MBD. Zero-point energy contributions
and thermal effects are described using the quasi-harmonic approximation
(QHA), including explicit treatment of thermal expansion, which we
find to be non-negligible for EMs. The lattice energies obtained with
PBE0+MBD are the closest to experimental sublimation enthalpies with
a mean absolute error of 9.89 kJ/mol. However, the state-of-the-art
treatment of vibrational and thermal contributions makes the agreement
with experiment worse. Pressure–volume curves are also examined
for six representative materials. For pressure–volume curves,
all three methods provide reasonable agreement with experimental data
with mean absolute relative errors of 3% or less. Most of the intermolecular
interactions typical of EMs, namely nitro-amine, nitro–nitro,
and nitro-hydrogen interactions, are more sensitive to the choice
of the dispersion method than to the choice of the exchange-correlation
functional. The exception is π–π stacking interactions,
which are also very sensitive to the choice of the functional. Overall,
we find that PBE+TS, PBE+MBD, and PBE0+MBD do not perform as well
for energetic materials as previously reported for other classes of
molecular crystals. This highlights the importance of testing dispersion-inclusive
DFT methods for diverse classes of materials and the need for further
method development.
scite is a Brooklyn-based organization that helps researchers better discover and understand research articles through Smart Citations–citations that display the context of the citation and describe whether the article provides supporting or contrasting evidence. scite is used by students and researchers from around the world and is funded in part by the National Science Foundation and the National Institute on Drug Abuse of the National Institutes of Health.